Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 412 a.a., porin-like protein from Pseudomonas putida KT2440

 Score =  221 bits (563), Expect = 3e-62
 Identities = 138/386 (35%), Positives = 201/386 (52%), Gaps = 20/386 (5%)

Query: 35  RNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGH 94
           RN++++ +F +PS   Q+  +EW Q FI + RSGFTEG +G G+D  G   +KLDGG G 
Sbjct: 40  RNFYINRNFTNPSNP-QSKAEEWTQSFILDARSGFTEGPIGFGVDVLGLWSVKLDGGGGT 98

Query: 95  SGTGLLPRDSDGRAESEYSSAGAALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATG 154
            GT LLPR  DGR   +Y     A K ++  T+L+ GE M   P+  + D R  P+   G
Sbjct: 99  YGTALLPRHDDGRPADDYGRLAVAGKARISKTELKIGEWMPVLPILRSDDGRSLPQTFRG 158

Query: 155 WWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDFSGYGATTHNRAISLAGATFAPNGPFGA 214
             V + +     L  G+F   N+  N ++ +D S YG    +R   + G           
Sbjct: 159 GQVTSNEIAGLTLYGGQFRG-NSPRNDASMEDMS-YGGGVSDRFNFVGGEYKFNQDRTQV 216

Query: 215 ALYAGQLENTWRQAYLNLNLAQ--GNWRLDGNL--YKTRDTGNASAGAIDTLAYSLLAKY 270
            L+   L++ ++Q YL L+ +Q  G+W L  NL  +   + G+  AG +D   YS +   
Sbjct: 217 GLWNAVLKDVYQQQYLQLSHSQPVGDWTLGANLGYFHGDEDGSERAGQLDNKTYSGMFSA 276

Query: 271 SFGAQALSVAYQKVEGDTPFDFVGGDSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGA 330
            +G     V  QKV+GDT     G     LAN    + F+   E SWQ+R+D NF T+G 
Sbjct: 277 KYGGSTFWVGLQKVDGDTWMRVNGTSGGTLANDSYNSSFDNANERSWQVRHDFNFVTVGV 336

Query: 331 PGLSLMGRYVSGRGIDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFS 390
           PGL+LM RY+SGR +      +GG         GK W R+ +L YV+QSGA KDLS+ + 
Sbjct: 337 PGLTLMNRYISGRDVH-----SGGV------TDGKEWVRETELAYVIQSGAFKDLSVKWR 385

Query: 391 HVSHRANQAQAGDDIDRIYLIIEYPL 416
           + S R +   + ++ D   LI  YPL
Sbjct: 386 NSSIRRD--YSNNEFDENRLIFNYPL 409