Pairwise Alignments

Query, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

Subject, 439 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  198 bits (504), Expect = 2e-55
 Identities = 142/420 (33%), Positives = 215/420 (51%), Gaps = 54/420 (12%)

Query: 31  SLLSRNYFLHSDFRSPSGSGQNYRQEWAQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDG 90
           ++L RN +++ D +     G + + EW Q FI    SGFT+GTVGVG+DA G   ++LDG
Sbjct: 37  NVLLRNAYINRDKKH----GTDDQIEWGQAFIANFSSGFTQGTVGVGVDAFGLYAVRLDG 92

Query: 91  GRGHSGTGLL-------PRDSDGRAESEYSSA--GAALKMQLGNTQLRYGEMMVETPVFD 141
           G+GH+G G +         +++G A S ++ A  GAA+K ++ NT L+YG+ M   PV  
Sbjct: 93  GKGHNGGGGVDFFKPHETTNAEGNASSPHNLARGGAAVKFRISNTVLKYGDQMPALPVLQ 152

Query: 142 TGDKRLHPEYATGWWVENTDQPDWRLQAGRFTAFNNQDNSSTHDDFSGYGATTHNRAISL 201
             D RL PE  TG  + + +     L AGRFT    Q+   + +   G G     ++I++
Sbjct: 153 YDDARLLPESFTGTLITSKEIQGLELNAGRFT----QEARKSAERRDGGGL----KSINV 204

Query: 202 AGATFAPNGPFGAALYAGQLENTWRQAYLNLN-----LAQGNWRLDGNLYKTRDTGN--- 253
            G ++     F A+LY    E+  ++ YL LN      +  +  LD N YK+ D  N   
Sbjct: 205 LGGSYKFTDNFTASLYTADNEDVMKKHYLGLNYVFPIASDQSLTLDFNGYKS-DINNKYV 263

Query: 254 --ASAGAIDTLAYSLLAKYSFGAQALSVAYQKVEGDTPFDF----------VGGDSIYLA 301
             A         +SL A Y++GA + ++A+Q+  G T +++           GG +IYLA
Sbjct: 264 KAAGLNGDSNTIWSLAATYAYGAHSFTLAHQRSTGSTGYNYGFYQNAGGVGDGGSTIYLA 323

Query: 302 NAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRGIDGSHAPAGGAYVNQYG 361
           N+  ++DFN   E SWQL Y L+F   G PGL+    YV G  I+  +        N  G
Sbjct: 324 NSY-WSDFNAEDERSWQLGYGLDFGAYGIPGLTYKLAYVVGDNINTRNV------ANPQG 376

Query: 362 DG-GKHWERDIDLKYVVQSGAAKDLSL----SFSHVSHRANQAQAGDDIDRIYLIIEYPL 416
            G GK  E    ++YVVQ G AKDLS+    SF   ++   Q    DD + + + +EYP+
Sbjct: 377 FGEGKEREIFNQIRYVVQDGPAKDLSIKLRSSFLRTNNAVQQNGYNDDGNEVRVFVEYPI 436