Pairwise Alignments

Query, 299 a.a., Tyrosine recombinase XerC from Pseudomonas putida KT2440

Subject, 331 a.a., site-specific tyrosine recombinase XerD from Agrobacterium fabrum C58

 Score =  137 bits (346), Expect = 3e-37
 Identities = 107/320 (33%), Positives = 161/320 (50%), Gaps = 26/320 (8%)

Query: 4   QLEAYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHH 63
           +LE++   +  ER  + +T   Y  DL  +  +    G +  +A Q   L   +  L   
Sbjct: 13  RLESFLEMMSAERGAAANTLSSYEHDLADLREFLGRRGQSLTEA-QTPDLSAYLTHLAAQ 71

Query: 64  GQSPRSLARLLSAVRGLYRYLNREGLCQHDPANGLSAPKGERRLPK---VLDTDRALQLL 120
           G +  S AR LS++R  YR+L  EGL   DP   + AP+    LPK   V D +R L L 
Sbjct: 72  GFAATSQARRLSSMRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLA 131

Query: 121 DGGVDDDF---IAR-RDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARV 176
                 +    +AR R   +LEL Y++G+R+SEL +L +  L      + + GKG K R+
Sbjct: 132 AQEAATEGPGQLARIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRM 191

Query: 177 LPVGRKAREALQAWYRLR-GIGNPRDRA--------------VFITRQGNRISPRAVRLR 221
           + + R A EA++ +   R  +   + +A              +F +       PR V  R
Sbjct: 192 VLLSRAAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFAR 251

Query: 222 -VKVAGERE--LGQHLHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIYTHLDFQ 278
            +K    R       + PH+LRH+FASH+L++  DLRAVQE+LGH+DISTTQIYTH+  +
Sbjct: 252 DLKDIAIRAGLTASAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLEE 311

Query: 279 HLAAVYDSAHPRAKRSKGTD 298
            L  +  + HP AK+ K  D
Sbjct: 312 RLQELVQTHHPLAKQGKNLD 331