Pairwise Alignments

Query, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

Subject, 515 a.a., ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

 Score =  162 bits (411), Expect = 4e-44
 Identities = 146/504 (28%), Positives = 236/504 (46%), Gaps = 46/504 (9%)

Query: 9   EGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGELQVLGGS 68
           +G+   +G +  LH + F+L  G    L+G +GAGKSTL+ ++AG ++L  G L++ G  
Sbjct: 18  DGVVKAFGPVQVLHGVSFALAPGRVYGLLGENGAGKSTLMKILAGYEQLTGGTLRINGQP 77

Query: 69  IRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATL---FGLGRRECEQRMANLL 125
            +    R A    +  + Q    NL  +LS+++NI         + L     E+  A  L
Sbjct: 78  QQFGSSRDAEALGIVLIHQEF--NLAEDLSVAQNIFLGHEKKKGWLLDDAAMEREAAAAL 135

Query: 126 QATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWELVEQ 185
            A  L    +    KL    KQ + +  A+     LL++DEPT  + P    R ++L+ Q
Sbjct: 136 SAVGLNIDPRTKVRKLIVAEKQLVEIAKAIARRARLLVMDEPTATLTPGETERLFKLIAQ 195

Query: 186 VRAQRPQLTLLVATAYMEEAEQF-EHCLMLDGGRLLAAGPSHELAAVTSSGKLDDAFTHY 244
           +RA    +T++  +  ++E EQ  +  +++  GR +A  P+ E+             T  
Sbjct: 196 LRADG--VTIVYISHKLDEVEQVTDEVIVMRDGRFVARAPTPEV-------------TRQ 240

Query: 245 QGAGKAQHQPLA--IPPRQATDGPVAIEAHDLTLRFGDFTA---VNKVSFAIGRGEIFGF 299
           Q A     + LA   PPR      V + A    +R  DF         SF +  GEI GF
Sbjct: 241 QMANLMVGRELADLYPPRD-----VVVAADAPAMRVRDFNVPGWAQDASFEVRPGEILGF 295

Query: 300 LGSNGCGKTTTMKVLTGLMPASEGSASLLGRPVDASDL------ATRKRVGFMSQSFS-- 351
            G  G G+T   + L GL PAS G+  +LG+PV           A +  + ++S+     
Sbjct: 296 AGLVGAGRTELFEGLLGLRPAS-GNVEMLGKPVPGGKGWRNPRDAAKHGLTYLSEDRKGK 354

Query: 352 -LYGELSTRQNLAL-----HARLFDLPKAESAQRIDELIERFDLAAIADQPSGALPLGLR 405
            L+     RQNL L     +A+ +  P+AE       + E        +  + +L  G +
Sbjct: 355 GLHVNFGLRQNLTLMALERYAQPWLRPEAERGALAGAVKEYGIRTGSLEVKASSLSGGNQ 414

Query: 406 QRLSLAVAVLHRPEVLILDEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEAQR 465
           Q+L+LA  +  RP+V++LDEPT GVD  A+ D + L+  L+RE    I +S+  M     
Sbjct: 415 QKLALAKVLQPRPKVVVLDEPTRGVDVGAKRDIYFLIQRLAREGLAVIVVSSELMELIGL 474

Query: 466 CDRISLMHAGRVLACDTPDALQHQ 489
           C R+++M AGR++A    D L  +
Sbjct: 475 CHRVAVMRAGRLVATLDADHLTEE 498



 Score = 95.5 bits (236), Expect = 7e-24
 Identities = 76/276 (27%), Positives = 129/276 (46%), Gaps = 28/276 (10%)

Query: 267 VAIEAHDLTLRFGDFTAVNKVSFAIGRGEIFGFLGSNGCGKTTTMKVLTGLMPASEGSAS 326
           VA+E   +   FG    ++ VSFA+  G ++G LG NG GK+T MK+L G    + G+  
Sbjct: 13  VAVEFDGVVKAFGPVQVLHGVSFALAPGRVYGLLGENGAGKSTLMKILAGYEQLTGGTLR 72

Query: 327 LLGRPVDASDLATRKRVG--FMSQSFSLYGELSTRQNLALHARLFDLPKAESAQRIDELI 384
           + G+P         + +G   + Q F+L  +LS  QN+ L        K +     D  +
Sbjct: 73  INGQPQQFGSSRDAEALGIVLIHQEFNLAEDLSVAQNIFLGHE-----KKKGWLLDDAAM 127

Query: 385 ERFDLAAIADQPSGALP--------LGLRQRLSLAVAVLHRPEVLILDEPTSGVDPAARD 436
           ER   AA++       P        +  +Q + +A A+  R  +L++DEPT+ + P   +
Sbjct: 128 EREAAAALSAVGLNIDPRTKVRKLIVAEKQLVEIAKAIARRARLLVMDEPTATLTPGETE 187

Query: 437 DFWRLLVELSREQGVTIFLSTHFMNEAQR-CDRISLMHAGRVLA-CDTPDALQHQYQGDT 494
             ++L+ +L R  GVTI   +H ++E ++  D + +M  GR +A   TP+  + Q     
Sbjct: 188 RLFKLIAQL-RADGVTIVYISHKLDEVEQVTDEVIVMRDGRFVARAPTPEVTRQQMAN-- 244

Query: 495 LEDAFVRCLEQAQELAPAATDSNVLEQASTPTLPLR 530
                   L   +ELA      +V+  A  P + +R
Sbjct: 245 --------LMVGRELADLYPPRDVVVAADAPAMRVR 272