Pairwise Alignments

Query, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

Subject, 929 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score =  904 bits (2336), Expect = 0.0
 Identities = 479/918 (52%), Positives = 616/918 (67%), Gaps = 18/918 (1%)

Query: 5   ALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGELQV 64
           A+  E +SHRYG +IAL+ +  SLP G   AL+GPDG GKSTLLGLI+GVK+LQ G L V
Sbjct: 12  AIRIESLSHRYGGIIALNEVSLSLPKGKTTALVGPDGVGKSTLLGLISGVKKLQTGRLSV 71

Query: 65  LGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQRMANL 124
           LG  + +RR R     +VA+MPQGLG NLYP LS+ ENI FF  LFGL   E E  M  L
Sbjct: 72  LGFDLTERRKREEFLSRVAYMPQGLGRNLYPTLSVRENIDFFGRLFGLSAVEREAHMRRL 131

Query: 125 LQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWELVE 184
           L AT L  F  RPAGKLSGGMKQKLGLCC+L+H+PDLLILDEPTTGVDPLSRR+FWELV+
Sbjct: 132 LDATGLAPFPDRPAGKLSGGMKQKLGLCCSLVHDPDLLILDEPTTGVDPLSRRQFWELVD 191

Query: 185 QVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDDAFTHY 244
            + A+RP +T+LV+TAYMEEAE+F H + +D G+++A G + E+     +  L+ A+   
Sbjct: 192 AMCAERPDMTVLVSTAYMEEAERFGHLVAMDDGKVIAQGDTREIMRDAGADTLEAAYVRL 251

Query: 245 QGAGKAQH-QPLAIPPRQATDGPVAIEAHDLTLRFGDFTAVNKVSFAIGRGEIFGFLGSN 303
               K      L +P  Q      AIEAHDLT RFGDF AV+ VSF IGRGEIFGFLGSN
Sbjct: 252 LPQDKRPSGDALVVPAWQDKGEAPAIEAHDLTRRFGDFVAVDHVSFRIGRGEIFGFLGSN 311

Query: 304 GCGKTTTMKVLTGLMPASEGSASLLGRPVDASDLATRKRVGFMSQSFSLYGELSTRQNLA 363
           GCGKTTTMK+LTGL+ A++G+ASL GRP+   D+ TR RVG+MSQ+FSLY ELS RQNL 
Sbjct: 312 GCGKTTTMKMLTGLLDATDGTASLFGRPIAPGDMETRMRVGYMSQAFSLYEELSVRQNLV 371

Query: 364 LHARLFDLPKAESAQRIDELIERFDLAAIADQPSGALPLGLRQRLSLAVAVLHRPEVLIL 423
           LHARL+ +P+ ++ + +   + +F+L A AD    ALPLG+RQRL LA A LHRPE+LIL
Sbjct: 372 LHARLYRVPRQQAGELVSAALAQFELEAHADAVPAALPLGIRQRLQLAAACLHRPEILIL 431

Query: 424 DEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEAQRCDRISLMHAGRVLACDTP 483
           DEPTSGVDPAARD FWR L+ LSR++GVTIF+STHFMNEA+RCDRISLMH GRVL    P
Sbjct: 432 DEPTSGVDPAARDMFWRHLIRLSRDEGVTIFVSTHFMNEAERCDRISLMHRGRVLTVGAP 491

Query: 484 DALQHQYQGDTLEDAFVRCLEQAQELAPAAT-----DSNVLEQA----------STPTLP 528
             L  +Y    LEDAF+  LE+  + AP A+     D++V                P LP
Sbjct: 492 TELTQRYDAQRLEDAFIAVLEKDNDEAPTASAHLPVDASVASSTPAAGARSTAPGRPRLP 551

Query: 529 LRRGFSLRRLLAVAVREGKELLRDKVRLAFALLGAVFMMVIFGYGISLDVENLAFAVHDQ 588
              G       A A RE  EL+RD++RLAFAL+G + ++ I  Y IS DV+N+  AV D 
Sbjct: 552 TAAGSWPGFAWAFARREATELMRDRIRLAFALIGPIILLCIAAYSISFDVQNIRLAVLDH 611

Query: 589 DQSPQSRAYLEAFRGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAGRQP 648
           D+S  SR     F GSRYF  +  +   +   Q L+ +  K+ L+IPPGFGRDL AGR+P
Sbjct: 612 DRSAASRDLQLYFEGSRYFRVEPELASDAAADQALREASTKMVLDIPPGFGRDLTAGRRP 671

Query: 649 VVAAWLDGGMPFRAETSRNYVEAV-HQANLEQLAKASPQPQPRQDPVRLETRFRYNQDVV 707
            V   +DG  PF A  +R Y EAV  +  ++QL  A P   P      +E RF YNQ+  
Sbjct: 672 AVDVRIDGASPFPASNARAYAEAVLLRYAMDQLRSAQPFAVPDLSST-IEPRFIYNQEFR 730

Query: 708 SVNAIGPGVMALILAFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQMPYLAVS 767
           S+ A+ PGV+ L +  IPAMLTALG+VREKE+GSITN YA+P +   FL+GKQMPY  ++
Sbjct: 731 SIYAMAPGVLMLCMILIPAMLTALGVVREKEIGSITNLYASPASLGAFLVGKQMPYALLA 790

Query: 768 LVNLALLVAMNRWLFAVPLKGSVLALACGGVAYLLATTSLGLLISAFTRTQIAAILGTMI 827
           +++   L+ +  ++  VPLKGS+ AL  GG  ++L+ T LGL+ISAF R+Q+AAI  T +
Sbjct: 791 MISFVTLILVTVFILGVPLKGSLPALLIGGFLFILSVTGLGLMISAFVRSQVAAIFATSL 850

Query: 828 ITSLPTIQFSGLIVPRSSLDGAAAVMGQLFPAGYFLDIAVGTFTKALGLRELWPQCLILL 887
           I  +P++ FSGL+ P S+L G + ++G  FP+ +F  +++GTFTK LG+       L L+
Sbjct: 851 ICLIPSVNFSGLLYPVSTLTGPSHIIGLTFPSSWFQIVSLGTFTKGLGMASFGQAYLALM 910

Query: 888 SFFAAFTGLSLAMLKKQE 905
           +    F G +  ML KQE
Sbjct: 911 ALAFLFVGGARLMLGKQE 928



 Score =  129 bits (323), Expect = 1e-33
 Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 7/240 (2%)

Query: 3   APALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGEL 62
           APA+ A  ++ R+GD +A+  + F +  G     +G +G GK+T + ++ G+     G  
Sbjct: 274 APAIEAHDLTRRFGDFVAVDHVSFRIGRGEIFGFLGSNGCGKTTTMKMLTGLLDATDGTA 333

Query: 63  QVLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQRMA 122
            + G  I      T +  +V +M Q    +LY ELS+ +N+   A L+ + R++  + ++
Sbjct: 334 SLFGRPIAPGDMETRM--RVGYMSQAF--SLYEELSVRQNLVLHARLYRVPRQQAGELVS 389

Query: 123 NLLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWEL 182
             L   +L+  A      L  G++Q+L L  A +H P++LILDEPT+GVDP +R  FW  
Sbjct: 390 AALAQFELEAHADAVPAALPLGIRQRLQLAAACLHRPEILILDEPTSGVDPAARDMFWR- 448

Query: 183 VEQVRAQRPQ-LTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDDAF 241
              +R  R + +T+ V+T +M EAE+ +   ++  GR+L  G   EL     + +L+DAF
Sbjct: 449 -HLIRLSRDEGVTIFVSTHFMNEAERCDRISLMHRGRVLTVGAPTELTQRYDAQRLEDAF 507