Pairwise Alignments

Query, 906 a.a., ribosome-associated ATPase from Pseudomonas putida KT2440

Subject, 916 a.a., Ribosome-associated ATPase RbbA from Sphingobium sp. HT1-2

 Score =  885 bits (2288), Expect = 0.0
 Identities = 458/905 (50%), Positives = 614/905 (67%), Gaps = 4/905 (0%)

Query: 4   PALLAEGISHRYGDLIALHPLGFSLPVGTRCALIGPDGAGKSTLLGLIAGVKRLQQGELQ 63
           P +   G+   YG   AL  +   +P G    LIGPDG GKS+LL L+AG   +Q G++ 
Sbjct: 14  PVVRLSGVRLHYGKTQALRGIDLDIPGGRMIGLIGPDGVGKSSLLSLVAGAHVIQDGDVY 73

Query: 64  VLGGSIRQRRHRTALYPKVAFMPQGLGNNLYPELSISENIRFFATLFGLGRRECEQRMAN 123
           VLGG +R +RHR+ + P++A+MPQGLG NLYP LS+ EN++FF  LFG    E  +R+  
Sbjct: 74  VLGGDMRDKRHRSDVCPRIAYMPQGLGKNLYPTLSVEENLQFFGRLFGHDGAERRRRIDA 133

Query: 124 LLQATDLQHFAQRPAGKLSGGMKQKLGLCCALIHEPDLLILDEPTTGVDPLSRRRFWELV 183
           L +AT L  F  RPAGKLSGGMKQKLGLCCALIH+PDLLILDEPTTGVDPL+R +FW+L+
Sbjct: 134 LTRATGLDPFLARPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWDLI 193

Query: 184 EQVRAQRPQLTLLVATAYMEEAEQFEHCLMLDGGRLLAAGPSHELAAVTSSGKLDDAFTH 243
             +R  + Q++++VATAYM+EA++F+  + +D G++L  G   E+ A T +  L++AF  
Sbjct: 194 NDIRQTQAQMSVIVATAYMDEAQRFDWLVAMDDGQILDTGTPAEIFARTGTSSLEEAFIA 253

Query: 244 YQGAGKAQ-HQPLAIPPRQATDGPVAIEAHDLTLRFGDFTAVNKVSFAIGRGEIFGFLGS 302
                K + H+P+ IPP +A++  +AIEA  LT+RFGDFTAV+ VSF I RGEIFGFLGS
Sbjct: 254 VLPEEKKRGHEPVIIPPLEASEDDIAIEAQGLTMRFGDFTAVDHVSFRIRRGEIFGFLGS 313

Query: 303 NGCGKTTTMKVLTGLMPASEGSASLLGRPVDASDLATRKRVGFMSQSFSLYGELSTRQNL 362
           NGCGK+TTMK+LTGL+PA+EG A L G  VD  D++TRKRVG+MSQ+FSLY EL+ RQNL
Sbjct: 314 NGCGKSTTMKMLTGLLPATEGKAWLFGNAVDPDDMSTRKRVGYMSQAFSLYTELTVRQNL 373

Query: 363 ALHARLFDLPKAESAQRIDELIERFDLAAIADQPSGALPLGLRQRLSLAVAVLHRPEVLI 422
             HA LF +P+ +   R+ E+ +RFDL  + ++   +LPLG+RQRLSLAVA++H+PE+LI
Sbjct: 374 EFHAHLFHVPREDIPARVAEMADRFDLGPVMEELPDSLPLGIRQRLSLAVAMVHKPELLI 433

Query: 423 LDEPTSGVDPAARDDFWRLLVELSREQGVTIFLSTHFMNEAQRCDRISLMHAGRVLACDT 482
           LDEPTSGVDP ARD FWRLL ELSR   VTIF+STHFMNEA RCDR+S+MHAG VL  D 
Sbjct: 434 LDEPTSGVDPVARDGFWRLLAELSRRDKVTIFISTHFMNEAMRCDRMSMMHAGHVLDSDA 493

Query: 483 PDALQHQYQGDTLEDAFVRCLEQA-QELAPAATDSNVLEQASTPTLPLRRGFSLRRLLAV 541
           P  L  +     LE AF+  L  A  +  P   +S + + A      +RRGFS +R L  
Sbjct: 494 PARLIEKRGAPDLEQAFIGYLVDAGGDTRPPDEESALKDMAQAEHGTIRRGFSPQRALTY 553

Query: 542 AVREGKELLRDKVRLAFALLGAVFMMVIFGYGISLDVENLAFAVHDQDQSPQSRAYLEAF 601
           A RE  EL RD VR   AL+G++ +M++ G+G++ D+  L +AV D+D S  S+ Y    
Sbjct: 554 AWRETLELQRDPVRATLALIGSLILMLVIGFGMTTDINELNYAVLDRDNSILSQNYALDI 613

Query: 602 RGSRYFAEQAPIRDSSELHQRLQRSEIKLALEIPPGFGRDLYAGRQPVVAAWLDGGMPFR 661
            GS YF E APIRD  +L +R++  E+ L +EIPPGFGRD+ AGRQ  V AW DG  P R
Sbjct: 614 SGSSYFVEHAPIRDYDDLDRRMKDGELALVIEIPPGFGRDIAAGRQVTVGAWFDGANPQR 673

Query: 662 AETSRNYVEAVHQANLEQLAKASPQPQPRQDPVRLETRFRYNQDVVSVNAIGPGVMALIL 721
           AET + Y++ +HQ  L Q  +A+ +         +E R+RYN DV S+ A+ P V+ L+L
Sbjct: 674 AETVQGYIQGLHQHWLSQ--QAAARGSAVGSSFSIENRYRYNPDVQSLPAMVPIVIPLLL 731

Query: 722 AFIPAMLTALGIVREKELGSITNFYATPLTRLEFLLGKQMPYLAVSLVNLALLVAMNRWL 781
             +PAMLTAL +VREKE+GSI N Y TP++R EFLLGKQ+PY+ ++LVN  L+V M  ++
Sbjct: 732 LMLPAMLTALAVVREKEIGSIINLYVTPVSRSEFLLGKQLPYVVLALVNFLLMVLMAIFI 791

Query: 782 FAVPLKGSVLALACGGVAYLLATTSLGLLISAFTRTQIAAILGTMIITSLPTIQFSGLIV 841
           F VP+KGS   L      Y +  T +GLL SA TR+QIAA+   MI T +P   + G+  
Sbjct: 792 FGVPVKGSFPTLLLAAAIYCVTATGMGLLASAVTRSQIAAMFLAMIGTMIPATTYGGMTD 851

Query: 842 PRSSLDGAAAVMGQLFPAGYFLDIAVGTFTKALGLRELWPQCLILLSFFAAFTGLSLAML 901
           P SS++G+A ++G ++PA +   I+ G F KALG  +L    L L        G+++ +L
Sbjct: 852 PVSSMEGSARIIGDIYPASHMFTISRGVFAKALGFSDLAGSFLPLAISAPLIVGIAIMLL 911

Query: 902 KKQEA 906
           KKQEA
Sbjct: 912 KKQEA 916