Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 363 a.a., ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  386 bits (992), Expect = e-112
 Identities = 195/366 (53%), Positives = 263/366 (71%), Gaps = 6/366 (1%)

Query: 1   MNKMGKTLLAAALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTG-IKVKYDVFD 59
           MN +   +L AA++  MA    AE+K L VYNW DYI P  +  F+ Q   IK+ YD+FD
Sbjct: 1   MNMLKSLVLCAAVISGMA---HAEEKTLRVYNWFDYITPKALEDFKAQNPTIKLVYDIFD 57

Query: 60  SNETLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDA 119
           +NE LEAKLL G +GYD+VVPSN FLAKQI+AGV++ LDRS+L NWK+LDP L+K + +A
Sbjct: 58  TNEALEAKLLTGNAGYDVVVPSNVFLAKQIEAGVFQPLDRSQLQNWKHLDPKLMKLI-EA 116

Query: 120 SDKDNKHAFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDA 178
           +D  NK A PYM+G+I IG+NP+KVKAALGV+  +DSWD++FK ENI+KLK CGV+ LD+
Sbjct: 117 NDPGNKFAVPYMYGTILIGFNPDKVKAALGVNAPVDSWDLIFKEENISKLKQCGVALLDS 176

Query: 179 PTEMLPAALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVG 238
           P+E+LP AL +LG   +S+  +D   AE L LKIRP +TYFHSSKY+ D+ANG+ICVAVG
Sbjct: 177 PSEILPLALQHLGLDPNSSNPKDYAKAEALLLKIRPYVTYFHSSKYMADIANGDICVAVG 236

Query: 239 YSGDLEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPE 298
           YSG   Q+  RA +A + V VD  +PKEGA  ++DM+AIPK A++   AY F+N+L+QP+
Sbjct: 237 YSGSFSQAANRARDAKNGVTVDMRLPKEGAPIWFDMLAIPKGAKNPQDAYTFINYLLQPQ 296

Query: 299 IMAEITNAVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSW 358
           ++A I++ V +PN N  AT  VD  I ++P++YP       LY +       +R  TR+W
Sbjct: 297 VIAPISDFVGYPNPNKDATEQVDPSIRNNPNLYPTEAAMATLYTLKPLGRDAERARTRAW 356

Query: 359 TKIKSG 364
           +KIKSG
Sbjct: 357 SKIKSG 362