Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 367 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  407 bits (1046), Expect = e-118
 Identities = 204/363 (56%), Positives = 269/363 (74%), Gaps = 5/363 (1%)

Query: 6   KTLLA---AALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNE 62
           K LLA   AA + A A   QAE + L VYNW DYI P T+  F+K +G+K+ YD+FD+NE
Sbjct: 5   KRLLAPFIAATLFAGALHAQAEQRTLRVYNWFDYITPQTLTAFQKDSGVKLVYDIFDTNE 64

Query: 63  TLEAKLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDK 122
            LEAKLL G SGYD+VVPSN FLAKQI+AGV++ LDRSKLPNW++LDP L+K + +A+D 
Sbjct: 65  ALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWQHLDPALMKLI-EANDP 123

Query: 123 DNKHAFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDAPTE 181
            NK A PYM+G++ IG+NP KVKAALG +  +DSWD++FK ENIAKLK CGV+ LD+P+E
Sbjct: 124 GNKFAVPYMYGTVLIGFNPAKVKAALGDNAPVDSWDLIFKEENIAKLKQCGVALLDSPSE 183

Query: 182 MLPAALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSG 241
           +LP AL YLG P +S K  D K AE+L LKIRP ITYFHSSKY+ D+ANG+ICVAVGYSG
Sbjct: 184 ILPLALQYLGLPPNSDKPADYKKAEELMLKIRPHITYFHSSKYMADIANGDICVAVGYSG 243

Query: 242 DLEQSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMA 301
              Q+  RA EA + V VD  +PKEGA  ++DM+AIPK A + + A+ F+N+L++PE++A
Sbjct: 244 SFSQAANRAREANNGVVVDMRLPKEGAPIWFDMLAIPKGAANPEDAHTFINYLLRPEVIA 303

Query: 302 EITNAVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKI 361
            I++ V +PN N  AT  V+  I ++P++YP AE   +LY +     + +R  TR+WT+I
Sbjct: 304 PISDFVGYPNPNKDATDKVNPTIRNNPNLYPTAEAMAKLYTLKPLTRNAERARTRAWTRI 363

Query: 362 KSG 364
           KSG
Sbjct: 364 KSG 366