Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 369 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  340 bits (872), Expect = 4e-98
 Identities = 156/348 (44%), Positives = 241/348 (69%), Gaps = 2/348 (0%)

Query: 18  ASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLEAKLLAGKSGYDI 77
           A A  A+   +++YNW DYIAP+T+  F+K+ G+ V YDVFD++E +++KL+AG+SGYD+
Sbjct: 22  AEAGDAQKPSVHIYNWYDYIAPNTVKDFQKEAGVSVVYDVFDNSEVMQSKLMAGRSGYDV 81

Query: 78  VVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNKHAFPYMWGSIGI 137
           VV S + L   IKAGV + LDRSKLPNW +LDPD+L  +  ++D  N +A PY+WG+ GI
Sbjct: 82  VVASADLLPNLIKAGVLKRLDRSKLPNWSHLDPDVLAKL-QSNDPGNSYAAPYLWGTTGI 140

Query: 138 GYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDAPTEMLPAALHYLGKPTDS 196
           GY+ +KVK+ LG D  ++SWD++FK EN+AKL+ CGV+ LDAP E++P ALHYLG P +S
Sbjct: 141 GYDADKVKSLLGPDAPVNSWDLIFKEENLAKLRQCGVAMLDAPGEVIPIALHYLGLPYNS 200

Query: 197 TKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGDLEQSKARAHEAGDK 256
              +D K A++L LK+RP I YF SS++I D+ANGN+CV +G++G +  ++  +  AG+ 
Sbjct: 201 HNPDDYKKAQELLLKLRPHIAYFDSSRFISDLANGNVCVVLGWAGGVSDAQKASELAGNH 260

Query: 257 VKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEITNAVRFPNGNAAA 316
             + Y IP+EGA  + + +    DA + +    F+N++++PE++AE +N + +PN N  A
Sbjct: 261 RNLVYSIPREGAPVWVESMVQLNDAPNPEQGLAFINYMLRPEVIAESSNYLSYPNANKDA 320

Query: 317 TPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIKSG 364
           T  V+K I  +P +YP  +V   L+ +      ++R+ TR+W  +K+G
Sbjct: 321 TALVEKKIRDNPGVYPSKDVLSTLFPLEPLPLKLERIRTRAWNTVKTG 368