Pairwise Alignments

Query, 365 a.a., spermidine/putrescine ABC transporter - periplasmic subunit from Pseudomonas putida KT2440

Subject, 359 a.a., putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  395 bits (1016), Expect = e-115
 Identities = 193/360 (53%), Positives = 262/360 (72%), Gaps = 4/360 (1%)

Query: 6   KTLLAAALMGAMASAVQAEDKVLNVYNWSDYIAPDTIAKFEKQTGIKVKYDVFDSNETLE 65
           +T L A LM  +A++V +  + + +YNWS Y+APDT+  F++ +GI   YDV+DSNETL+
Sbjct: 2   RTFLLAPLM--LAASVASAAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLD 59

Query: 66  AKLLAGKSGYDIVVPSNNFLAKQIKAGVYEELDRSKLPNWKNLDPDLLKAVGDASDKDNK 125
            KL+ G SGYD+V PSN+F+A+QI+    + LD+SKLPNW NL+P LLKA+ + +D  N+
Sbjct: 60  GKLMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKAL-EVNDPGNQ 118

Query: 126 HAFPYMWGSIGIGYNPEKVKAALGVDK-IDSWDVVFKPENIAKLKSCGVSFLDAPTEMLP 184
           + FPY+WGS GIGYN +KVKA LG +  +DSWD++FKPE ++KLKSCGV+ LD   E+LP
Sbjct: 119 YGFPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLP 178

Query: 185 AALHYLGKPTDSTKKEDLKAAEDLFLKIRPSITYFHSSKYIGDMANGNICVAVGYSGDLE 244
            ALHYLG P  S   +D + A+DL +K+RP I+YFHSSKY GD+ANG+ICV VG+SGD+ 
Sbjct: 179 IALHYLGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVL 238

Query: 245 QSKARAHEAGDKVKVDYVIPKEGAGTFYDMVAIPKDAEHKDAAYEFMNFLMQPEIMAEIT 304
           Q+K RA EA + VKV Y IPKEGA  ++DMVA+P DA  + A Y +MN+L+QPE+MA I+
Sbjct: 239 QAKNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANIS 298

Query: 305 NAVRFPNGNAAATPFVDKDITSDPSIYPPAEVKKQLYAIAAPDASVQRVITRSWTKIKSG 364
           N V++ NGN  A   VD  +  +  IYP  EV  +LYA+ A  A + R+ TR WT IK+G
Sbjct: 299 NHVQYANGNLKADGLVDPAMKGNTMIYPSDEVMGKLYALEAMPAKIDRIRTRIWTSIKAG 358