Pairwise Alignments

Query, 306 a.a., spermidine/putrescine ABC transporter - inner membrane subunit from Pseudomonas putida KT2440

Subject, 277 a.a., Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1) from Variovorax sp. SCN45

 Score =  132 bits (332), Expect = 9e-36
 Identities = 75/254 (29%), Positives = 133/254 (52%), Gaps = 1/254 (0%)

Query: 39  IVLKISFAEADVAIPPYTEIYTYVEDKIQLVLNLANYGLLTEDELYLSAYLGSLKMAFFS 98
           IVL +  A   + +     IYT  E  ++      NY  +  D  +      +L++A  +
Sbjct: 11  IVLALMVAPMAMLLRYSLNIYTPTELMVE-AFTPRNYVQVFADPYFREVLSTTLQVAAVT 69

Query: 99  TLLCLLIGFPMAYAIANAKKETQTVLLLLIMMPTWTAILIRVYAWMGILSNNGLLNGFLL 158
           TL+ LL+G P  Y +A   +  +  L L  ++P     ++R   W+ +L N+GL N    
Sbjct: 70  TLIALLVGLPAGYTLARMPRRWKMWLTLATILPLMVGNVVRSAGWLALLGNSGLFNAVAQ 129

Query: 159 WTGLIDQPLQILNTNLAVYIGVVYSYLPFMILPLFANLVKHDPSLLEAASDLGSSTFNSF 218
           W+GL+ +P+Q++    AV   +V   LP M++ L + +     ++ EAA++LG+  F  F
Sbjct: 130 WSGLVREPMQLMFNRPAVVGVMVTIVLPLMVMTLASVIEGIPRNVEEAAANLGARPFTVF 189

Query: 219 WKITVPLSKNGIIAGCMLVFIPVVGEFVIPELLGGPETLMIGKVLWQEFFNNRDWPVASA 278
            ++ +P +  G+IAG  LVFI  +  +  P L+GGP   M+   ++Q+F    +WP  +A
Sbjct: 190 RRVVLPQAMPGVIAGMSLVFILCMNAYATPVLIGGPRFRMMTPEIYQQFVGLNNWPFGAA 249

Query: 279 LAVVMLAILIVPIL 292
           LA ++LA+ +  +L
Sbjct: 250 LAFMLLAVTLAVVL 263