Pairwise Alignments

Query, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 403 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score =  170 bits (430), Expect = 7e-47
 Identities = 119/344 (34%), Positives = 181/344 (52%), Gaps = 7/344 (2%)

Query: 18  LTGCS-KEEVPETLPRVGVQQVQPTDFAARVTLTGDVQARVQTDLSFRVGGKIISRSVDV 76
           L GCS K    + +  V    V  ++F A+   + +V+ARV++ L FRV GKI  R  ++
Sbjct: 24  LVGCSPKPAAQDPVRAVKFVTVGASEFDAQPEFSAEVRARVESRLGFRVAGKITRRQAEL 83

Query: 77  GDHVKANQVLARLDPKDLQNNVDSAKAEVFAAQARVTQTSAAFVRQQKLLPKGYTSQSEY 136
           G HV+A QVLA+LDP+D +   ++A+A+  AA       +A   R ++L  + + S +E 
Sbjct: 84  GQHVQAGQVLAQLDPQDYRLAAEAARAQQAAALTNRDLAAADLKRYRELREQNFISGAEL 143

Query: 137 DAAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVITERQAEVGQVVQATMPIFS 196
           +  E   ++ Q+ L+ AQAQL++   Q +YT LV++ AG+IT  +AE GQVVQA  P+  
Sbjct: 144 ERRETTWKAAQAQLEQAQAQLSSQGNQANYTTLVADVAGIITAIEAEPGQVVQAGTPVVR 203

Query: 197 LAVDGDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAHGFVREITPTVSAQSGTVQVK 256
           +A DG RD VF V E       + + V V        +  G VRE+  +  A + T  +K
Sbjct: 204 IAQDGARDVVFAVPEDRATLVKTGSPVTVRGWSGGN-ELQGQVREVAASADAVTRTYSIK 262

Query: 257 VGLKDVPPGMQLGAPVTATTNA---QGRPSIELPWSALTKALHEPAVWVVGEGD-KVELR 312
           V + D      LGA V A   A    G   ++LP SAL +     AVWV+ +    V  +
Sbjct: 263 VAI-DAATAPPLGATVYARPQALAHAGATVLKLPTSALRQEGKGSAVWVLDKSTMTVRSQ 321

Query: 313 KVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQVLKVDAK 356
            V++      + V+ASG+  G  VV  G  +L PG +V    +K
Sbjct: 322 AVQVATADGNEAVIASGITPGMMVVAAGVHVLSPGQKVTIYQSK 365