Pairwise Alignments

Query, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

 Score = 97.1 bits (240), Expect = 8e-25
 Identities = 101/356 (28%), Positives = 157/356 (44%), Gaps = 32/356 (8%)

Query: 27  PETLPRVGVQQVQPTDFAARVTLTGDVQARVQTDLSFRVGGKIISRSVDVGDHVKANQVL 86
           P+  P V V  V  ++  A    +G ++A  + D+  RV G + +     G  VK   +L
Sbjct: 50  PQATP-VSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQGDLL 108

Query: 87  ARLDPKDLQNNVDSAKAEVFAAQARVTQTSAAFVRQQKLLPKGYTSQSEYDAAEAALRSN 146
             +DP      V+ A+A+V +AQAR + + +   R ++L      +Q E+D    A R  
Sbjct: 109 VTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNAGREA 168

Query: 147 QSALKAAQAQLANANEQLSYTALVSEAAGVITERQAEVGQVVQA------------TMPI 194
            + L+AAQA L +A   L YT + +  +G I   +  VG +V A              PI
Sbjct: 169 DANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVSVSPI 228

Query: 195 FSLAVDGDRDAVFNVYESLLVAPPSDAGVVVSL--------LDDPKVQAHGFVREITPTV 246
           ++ + D D   +    + L     S  G + S+        LD       G ++ I   V
Sbjct: 229 YA-SFDADEQVITRALKDLPTG-SSARGQIESIPVQMGTAGLDGTPFT--GKLQLIDNQV 284

Query: 247 SAQSGTVQVKVGLKDVPPGMQLGAPVTATTNAQGRPSIELPWS--ALTKALHEPAVWVVG 304
            A+SGTV+V+    D   G  +          Q R    L  S  A+    ++  V VVG
Sbjct: 285 DAKSGTVRVRASF-DNKDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVG 343

Query: 305 EGDKVELRKVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGM----QVLKVDAK 356
           E  K   R+V +   + G  VV+ GLK G+ V+VNG Q + PG     Q + +DAK
Sbjct: 344 EDSKATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALVAPQQVTMDAK 399