Pairwise Alignments

Query, 362 a.a., HlyD family secretion protein from Pseudomonas putida KT2440

Subject, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

 Score =  173 bits (438), Expect = 7e-48
 Identities = 112/344 (32%), Positives = 179/344 (52%), Gaps = 2/344 (0%)

Query: 9   VVCLGLLYMLTGC-SKEEVPETLPRVGVQQVQPTDFAARVTLTGDVQARVQTDLSFRVGG 67
           ++ L    +L GC S+EE PE +  V   +V+P   +      G +QAR ++ L FRV G
Sbjct: 5   LLMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSG 64

Query: 68  KIISRSVDVGDHVKANQVLARLDPKDLQNNVDSAKAEVFAAQARVTQTSAAFVRQQKLLP 127
           +I  R +DVG  VK    LA LDP D QN + +A+ ++   QA+     A   RQQ+L  
Sbjct: 65  RIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYD 124

Query: 128 KGYTSQSEYDAAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVITERQAEVGQV 187
           +G  +Q++ D A+  L++  +AL+ A++ ++ A +QL Y+ L ++ A VIT  QAE GQ 
Sbjct: 125 RGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQT 184

Query: 188 VQATMPIFSLAVDGDRDAVFNVYESLLVAPPSDAGVVVSLLDDPKVQAHGFVREITPTVS 247
           V A   + +LA    ++AV ++   L           V+   DP +     +RE+ P   
Sbjct: 185 VTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQAD 244

Query: 248 AQSGTVQVKVGLKDVPPGMQLGAPVTATTNAQGRPSIELPWSALTKALHEPAVWVVGEGD 307
           A + T + ++ L   P    LG  ++ T +++  P  ELP SAL +   +  VWV+   +
Sbjct: 245 ATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQN 304

Query: 308 K-VELRKVEIRRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQV 350
           K V  R V +       IV+++G++ GE VV  G   L PG +V
Sbjct: 305 KTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348