Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 368 a.a., secretion protein HylD from Pseudomonas simiae WCS417

 Score =  182 bits (461), Expect = 2e-50
 Identities = 126/351 (35%), Positives = 182/351 (51%), Gaps = 10/351 (2%)

Query: 3   RLLLMLSAAVLLVGCTSEEEAPE---VIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLG 59
           RLL  L+  ++L GC S+ +      + RPVL+ KVE    +Q   + G + AR ES LG
Sbjct: 7   RLLTPLALLIILNGCNSKADTAAETPLPRPVLAAKVEA-AGTQQSAYTGVVAARTESDLG 65

Query: 60  FRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQ 119
           FRVSG++  R +D G  V  GDTL  LD  D +  LR+A+  +   QAQ    + D  R 
Sbjct: 66  FRVSGKVIERKVDPGQHVSRGDTLLVLDIGDFELALRSAKNRVHAAQAQLRQRRDDENRY 125

Query: 120 QQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQA 179
           Q+L   G  ++   D + T L+   A L  A+S  SQ  ++  YS L+AD   +IT  + 
Sbjct: 126 QRLASTGAVSRQIFDQSATLLRVAEAELASAQSDASQIENRRTYSVLKADGDGIITDVRV 185

Query: 180 EAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLS-KGLTFTVASQLDPTINTTASLRE 238
           + GQ V  GQ V  LA    +EA+++LP    +Q + K L F   +   P    TA+LRE
Sbjct: 186 DRGQVVAEGQIVARLAHDGAREAIVNLPENQRDQAAQKALAFPFGA---PDQAVTATLRE 242

Query: 239 LEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSE-VSPRSELPLSALLERDGKTQV 297
           L   AD TTRT RAR  L      F LG+ I+V L     + ++ +P+ ALL+    T V
Sbjct: 243 LSASADPTTRTYRARYVLHGAVDRFALGSTITVRLQGNGQAQQTRVPIGALLDSGQGTGV 302

Query: 298 WVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
           W+I   +K V+   V +     +  +L +GV PG+ +V  G + L  G  V
Sbjct: 303 WLIGADDK-VSFAPVKVASLGQEDALLDSGVSPGQVIVALGAHLLHSGDPV 352