Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 433 a.a., secretion protein HlyD from Pseudomonas simiae WCS417

 Score =  100 bits (250), Expect = 5e-26
 Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 23/339 (6%)

Query: 33  VKVEPQVQSQLGRFA------GSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATL 86
           V+V P V   LG F       G++ A     +  RV G + +   + G  VK GD LA +
Sbjct: 68  VRVAPAV---LGEFPVYYKALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEI 124

Query: 87  DPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAA 146
           DP   QN L  A+G L + QAQ  NAQ D +R + LY +   A+  LD A+  +      
Sbjct: 125 DPRSYQNALLQAQGTLMQNQAQLKNAQVDVQRYRDLYAQDSIAKQTLDTAEALVLQYQGT 184

Query: 147 LEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTVTAGQ----AVVTLARPDVKEA 202
           ++  + AV  A+  L+++ +RA  +  +   Q + G  V A      AV+T  +P     
Sbjct: 185 VKTNQGAVDDAKLNLEFTKIRAPISGRVGLRQVDVGNLVAANDTTFLAVITQTQP--ISV 242

Query: 203 VIDLPIGLAEQL------SKGLTFTVASQLDPTINTTASLRELEPQADATTRTRRARLTL 256
              LP    E +         L      + D        L+ L+ Q D TT T + +   
Sbjct: 243 AFTLPENTLETVLTRYHAGNKLPVEAWDRGDVKQQAVGVLQSLDNQIDVTTGTLKFKARF 302

Query: 257 ASTPAAFHLGTAISVTLSSEVSPRSEL-PLSALLERDGKTQVWVIDTQNKTVATRDVALI 315
            +   A      ++V L ++      L P +A+   +  T V+V+D  +K V  + + + 
Sbjct: 303 DNKDQALFPNQFVNVHLLADTLHNVVLAPSAAIQFGNTGTFVYVLD-GDKKVKVQPLVVG 361

Query: 316 DRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDEDA 354
           D   D+ V+  G++ G+RVV  G + LK G ++    D+
Sbjct: 362 DTDGDNTVIKEGLKAGDRVVLEGTDRLKDGSEIEVVNDS 400