Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 360 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  172 bits (437), Expect = 9e-48
 Identities = 110/341 (32%), Positives = 174/341 (51%), Gaps = 1/341 (0%)

Query: 8   LSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGRIA 67
           L    LL GC  E+  P+    V    V+    +      G IQAR ++ L FRV G+I 
Sbjct: 12  LGLLTLLSGCGEEKAEPKQHSRVFVQTVQSADFAAAVTLTGDIQARVQTDLSFRVGGKII 71

Query: 68  RRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDRGV 127
           +R +DVG +V     LA LDP D Q  + +A+  +   QA+     A   RQ++L  +G 
Sbjct: 72  QRMVDVGDRVTAKQVLAKLDPKDLQTNVDSAQAQVVAEQARVKQTAAAFVRQEKLLPKGY 131

Query: 128 GAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTVTA 187
            ++++ D AQ  L+++ +AL  A++ ++ AR+QL Y++L AD   VITA QAE GQ V A
Sbjct: 132 TSRSEYDSAQAALRSSQSALAAAQAQLANAREQLGYTSLIADAPGVITARQAEVGQVVQA 191

Query: 188 GQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADATT 247
              + +LAR   ++AV ++   L  +       TV+   +P+I     +RE+ P   A T
Sbjct: 192 TVPIFSLARDGERDAVFNVYESLLVEPPPDAPITVSLLDNPSIKAVGKVREVTPAVAANT 251

Query: 248 RTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQNKTV 307
            T + ++ L + P    LG+ +S T +       ELP +AL +   +  VW+ID   K  
Sbjct: 252 GTVQVKIALQALPKGMELGSVVSATANGPAKASIELPWAALTKDLSEPAVWLIDGDGK-A 310

Query: 308 ATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
               V +       +++  G++ GE+VV AG   L PG +V
Sbjct: 311 QLHKVTVARYLTGKVIIGDGLKGGEKVVVAGGQLLHPGMRV 351