Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  166 bits (420), Expect = 9e-46
 Identities = 111/345 (32%), Positives = 171/345 (49%), Gaps = 6/345 (1%)

Query: 6   LMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGR 65
           L +S   LL GC  EE A   IRP + V+ +P  QS +  + G ++AR+E  L FR+ G+
Sbjct: 10  LPVSLVFLLAGCGHEEAAQTTIRPAMVVQPQPSSQS-MDSYPGEVRARYEPDLAFRIGGK 68

Query: 66  IARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDR 125
           +++R ++ G +VK    LA LDP D + QL A    +A  +A     +A+  R + L DR
Sbjct: 69  VSKRLVEEGERVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDR 128

Query: 126 GVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTV 185
            + +++Q D ++   +   A L+Q ++    A +Q  Y+ LRA    V+     E GQ V
Sbjct: 129 QMVSRSQYDNSENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVV 188

Query: 186 TAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADA 245
           +AGQ V TLA    +E +I LP     +   G   +V     P    T  +REL P AD 
Sbjct: 189 SAGQTVFTLATDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADP 248

Query: 246 TTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQN- 304
            +RT  AR+          LG +  V +  +      +PLSAL   +G + VW +   N 
Sbjct: 249 KSRTFAARVAFTGGKVPAELGQSARVFIQVDGDIPLSVPLSALSAENGASYVWRVQPDNT 308

Query: 305 -KTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
            K    R  A  ++T   + +  G+ P + V+ AGV+ L  GQ+V
Sbjct: 309 LKRTPVRIGAFGEKT---VPVLEGLSPTDWVIAAGVHVLHEGQQV 350