Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 83/316 (26%), Positives = 150/316 (47%), Gaps = 10/316 (3%)

Query: 48  GSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQA 107
           G++ A     +  RV+G + +     G +VK GD LA +DP   +  L+ AEG LA+ QA
Sbjct: 85  GTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDPRPYRIALQQAEGTLAQNQA 144

Query: 108 QWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLR 167
           Q  NAQ D  R + LY     A+  LD A+  +      ++  ++ V+ AR  LD++ +R
Sbjct: 145 QLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVKTNQAQVNDARLNLDFTQIR 204

Query: 168 ADHAAVITAWQAEAGQTVTAGQ--AVVTLARPDVKEAVIDLP----IGLAEQLSKGLTFT 221
           A  +  +   Q + G  V A    A+V + + +       LP      + E+   G +  
Sbjct: 205 APISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTLPETELSTVLERYRSGASLP 264

Query: 222 VAS--QLDPTINTTASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSP 279
           V +  + D  + +T  L  ++ Q D TT T + +    +   A      ++V L ++   
Sbjct: 265 VEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKDLALFPNQFVNVRLLADTLK 324

Query: 280 RSEL-PLSALLERDGKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAG 338
           +  + P +A+   +  T  +V++ Q+ TV  R + +     ++ V+  G++ G+R+V  G
Sbjct: 325 QVVMAPAAAIQFGNDGTFAYVVNEQS-TVNVRKLKVGASDGENSVILDGLKAGDRLVLEG 383

Query: 339 VNSLKPGQKVTFDEDA 354
            + L+ G KV   ED+
Sbjct: 384 TDRLREGTKVEVVEDS 399