Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 367 a.a., RND efflux membrane fusion protein from Pseudomonas putida KT2440

 Score =  145 bits (367), Expect = 1e-39
 Identities = 112/345 (32%), Positives = 166/345 (48%), Gaps = 6/345 (1%)

Query: 7   MLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGR-FAGSIQARFESTLGFRVSGR 65
           +L  A++  G +S  + P    PV+   V  Q  S L R F+G + AR +S LGFRVSG+
Sbjct: 12  LLPLALVACGDSSPGKDPRDTPPVVKA-VSVQDASALARSFSGVVVARTQSDLGFRVSGK 70

Query: 66  IARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDR 125
           I +R +D G  VK G  L  +DP D   Q RA +  +   +A+      D  R + L   
Sbjct: 71  ILQRLVDTGQTVKRGQPLMRMDPVDLNLQARAQQEAVTAARARAKQTGDDEARYRGLVAD 130

Query: 126 GVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTV 185
           G  + +  D  +       A L  A++    AR+  +Y+ L AD   V+    AE GQ V
Sbjct: 131 GAVSASSYDQIKAAADAAKAQLSAAQAQADVARNATEYAVLLADADGVVMDTLAEPGQVV 190

Query: 186 TAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADA 245
           +AGQAVV LAR   +EAV+ LP  L  + + G T        P     A LR L   AD 
Sbjct: 191 SAGQAVVRLARAGQREAVVYLPETL--RPAPGSTALATLFGKPAQAVPAKLRLLSDAADP 248

Query: 246 TTRTRRARLTLASTPAAFHLGTAISVTLSSEVS--PRSELPLSALLERDGKTQVWVIDTQ 303
            TRT  AR  L    A+  LG  I++ +    +     ++P+ AL +      VWVI  Q
Sbjct: 249 ITRTFEARYVLTGPLASAPLGATITLEIPDTDTDFEAKQIPIGALFDPGNGAGVWVIAGQ 308

Query: 304 NKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
              V+ R V ++  + +  V+ + +  G+R+V  G + L+ G +V
Sbjct: 309 PAKVSWRAVEVLSVSDEKAVVKSDLHAGDRIVALGAHLLRDGVEV 353