Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 366 a.a., RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  177 bits (449), Expect = 4e-49
 Identities = 113/345 (32%), Positives = 178/345 (51%), Gaps = 2/345 (0%)

Query: 4   LLLMLSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVS 63
           + L  +AA+LL  C  E   P   RP L V+ +P  ++    + G ++ARFE  L FR+ 
Sbjct: 8   IALPAAAALLLAACGQEAAPPAAPRPALVVQPQP-AEAAADSYPGEVRARFEPELAFRIG 66

Query: 64  GRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLY 123
           G++++R ++ G +VK    LA LDP D + QL A    LA  +A     +A+  R Q+L 
Sbjct: 67  GKVSKRLVEEGQRVKADQPLAELDPQDVRLQLEANRAQLAAAEANLALVRAERDRYQKLL 126

Query: 124 DRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQ 183
           +R + + +Q D A+   +   A L+QA++    A +Q +Y+ LRA  A VI   Q E GQ
Sbjct: 127 ERQMVSHSQYDNAENLYRAGLARLKQAKAEFDVAGNQAEYAVLRAPQAGVIAKRQVEVGQ 186

Query: 184 TVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQA 243
            V AGQ V TLA    +E  I LP     + + G   +V     P       +REL P A
Sbjct: 187 VVAAGQTVFTLAADGEREVAIGLPEQQFARFAVGQPVSVELWSHPQARFQGRIRELSPAA 246

Query: 244 DATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQ 303
           D  +RT  AR+   +      LG +  V ++ +      +PLSA+   +G+  VW ++ +
Sbjct: 247 DPRSRTFAARIAFTTAAVPAELGQSARVFIAKDGLIPLAVPLSAVTAENGQAYVWRVNKE 306

Query: 304 NKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
           ++ +    V L    +DS+ +  G+ PG+ VV AG + L+ GQ+V
Sbjct: 307 SR-LERATVRLGAYGSDSVPVLEGLDPGDWVVAAGGHVLREGQEV 350