Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 366 a.a., Multidrug resistance protein MdtA from Pseudomonas sp. DMC3

 Score =  171 bits (434), Expect = 2e-47
 Identities = 111/341 (32%), Positives = 170/341 (49%), Gaps = 2/341 (0%)

Query: 8   LSAAVLLVGCTSEEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGRIA 67
           +S A LL  C  EE     +RP + V+ EP  Q+ +  + G ++AR+E  L FR+ G+++
Sbjct: 12  VSLAFLLSACGQEEVTKVTVRPAMVVQPEPSAQA-MESYPGEVRARYEPDLAFRIGGKVS 70

Query: 68  RRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDRGV 127
           RR +D G +VK    LA LDP D + QL A    +A  +A     +A+  R + L DR +
Sbjct: 71  RRLVDEGQRVKADQPLAELDPQDVRLQLEATRAQVAAAEANLNLVRAERDRYKTLMDRQM 130

Query: 128 GAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTVTA 187
            +++  D A+   ++  A L+Q ++  + + +Q  Y+ LRA    V+     E GQ V A
Sbjct: 131 VSRSAYDNAENLYRSGEARLKQIKAEFNVSTNQASYAVLRAPQDGVVAKRSVEVGQVVAA 190

Query: 188 GQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQADATT 247
           GQ V TLA    +E +I LP     +   G   TV             +REL P AD  +
Sbjct: 191 GQTVFTLATDGEREVLISLPEQSFGRFKVGQPVTVELWAQQNQRFAGQIRELSPSADPRS 250

Query: 248 RTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQNKTV 307
           RT  AR++  S      LG +  V + +  S    +PLSAL   +G T VWV++  N T+
Sbjct: 251 RTFAARISFTSGKVPAELGQSARVFVQAADSVSLSIPLSALTAENGATYVWVVN-GNNTL 309

Query: 308 ATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKV 348
               V +      S+ +  G+   + VV AGV+ L  GQ+V
Sbjct: 310 KKTPVRVGPFGEKSVAVLEGLNASDWVVAAGVHVLLDGQQV 350