Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 371 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  150 bits (378), Expect = 7e-41
 Identities = 103/307 (33%), Positives = 151/307 (49%), Gaps = 7/307 (2%)

Query: 46  FAGSIQARFESTLGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKV 105
           F G++ AR ES LGFRVSG++  R +D G  VK G  L  LDP D +   R  +  +A  
Sbjct: 52  FTGTVAARVESDLGFRVSGKVLERLVDAGQTVKRGQPLMRLDPVDLELAARTQQETVAAA 111

Query: 106 QAQWINAQADARRQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYST 165
           +A+ +    D  R + L   G  + +  D  +       A L  A++    AR+   Y+ 
Sbjct: 112 RARALQTTEDEARYRGLRGTGAISSSAYDQVKAAADAAKAQLSAAQAQADVARNASRYAV 171

Query: 166 LRADHAAVITAWQAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQL-SKGLTFTVAS 224
           L AD   ++    AE GQ V AGQ VV LA+   +EAVI LP  L   L S GL      
Sbjct: 172 LVADGDGIVMETLAEPGQVVNAGQTVVRLAQAGQREAVIQLPETLRPALGSTGLATRFGK 231

Query: 225 QLDPTINTTASLRELEPQADATTRTRRARLTLASTPAAFHLGTAISVTL---SSEVSPRS 281
           +    ++  A+LR+L   AD  TRT  AR  L    AA  LG  +++ +    +    R 
Sbjct: 232 E---GVSIPATLRQLSNTADRLTRTFEARYVLEGELAATPLGATVTIQIPDAQAATQGRL 288

Query: 282 ELPLSALLERDGKTQVWVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNS 341
           ++PL +L +      VWVI  +   VA R VA+     D+  ++  +Q GER+V  G + 
Sbjct: 289 QVPLGSLFDAGKGPGVWVIHGEPAKVAWRPVAIQHMGDDAARVTGQIQQGERIVALGAHL 348

Query: 342 LKPGQKV 348
           L+ G++V
Sbjct: 349 LREGEQV 355