Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 356 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  157 bits (398), Expect = 3e-43
 Identities = 108/349 (30%), Positives = 181/349 (51%), Gaps = 11/349 (3%)

Query: 10  AAVLLVGCTSEEEA----PEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSGR 65
           A + L GC  +++A    P+ ++ +   KV  Q ++Q+   +G + ARF++ L FR  GR
Sbjct: 12  AWIALTGCDGQKQALTPPPQPVKALQVQKVRYQNEAQI---SGEVTARFQADLAFRTEGR 68

Query: 66  IARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYDR 125
           +  R +DVG++V+ G  LA LD  +++  +  A+  L   +A     Q    R Q+L   
Sbjct: 69  VIARLVDVGSRVQKGQVLARLDDIEKKADVDVAQATLHSARATLQLKQRIFSRDQKLLTI 128

Query: 126 GVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQTV 185
              +QA+ D A+ +L +  A +  A+S++  A+D L Y+ L++D   VI + Q E GQ V
Sbjct: 129 HAISQAEWDQAREDLSSAQAGVVSAQSSLDTAKDALTYTELKSDADGVIVSRQLEVGQVV 188

Query: 186 TAGQAVVTLARPDVKEAVIDLP--IGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQA 243
            + Q V+TLA    ++AV D+P  I L E     ++  + S  D     TA +RE+ P  
Sbjct: 189 ASAQTVLTLAHDGPRDAVFDVPEAILLNEHPGDDISVRLISARDGEA-LTAKVREIAPML 247

Query: 244 DATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQ 303
           +  + T + + TL    A + LG ++   +     P   LP  AL    GK  VWVI+  
Sbjct: 248 NEASGTVQVKTTL-PVSAQWPLGASVVGNIVVNEQPGILLPPGALTSHQGKPAVWVIEEG 306

Query: 304 NKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDE 352
             TV+  ++++    +  +V++AG+ PG  VVT G   L  GQ V+ ++
Sbjct: 307 KDTVSLHEISVARYRSQDVVVTAGLTPGAWVVTEGSKFLIAGQHVSREQ 355