Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 380 a.a., efflux RND transporter periplasmic adaptor subunit from Dickeya dianthicola ME23

 Score =  211 bits (536), Expect = 3e-59
 Identities = 130/348 (37%), Positives = 195/348 (56%), Gaps = 2/348 (0%)

Query: 7   MLSAAVLLVGCTS--EEEAPEVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLGFRVSG 64
           +L AA LL GC     E A   +RPV +V V P V  ++    G I+   E+ LGFR+ G
Sbjct: 31  LLLAASLLSGCNDAGREAAAAPLRPVRTVTVAPSVAGEVLSQTGEIRPTEETALGFRLDG 90

Query: 65  RIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQQQLYD 124
           R+  R +DVGA VK G+ +ATLD  D +NQL++A+ DLA+  A    A+ + +R +QL  
Sbjct: 91  RVVSRAVDVGAVVKQGEVIATLDARDSENQLQSAKADLARAAASERLAEQNLKRMKQLAP 150

Query: 125 RGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQAEAGQT 184
            G  A++QLD AQ+N  +  +  E A+++V+  +D+L Y+ L A  A VITA  A  GQ 
Sbjct: 151 NGAIARSQLDEAQSNWSSAVSVRESAQASVNSEQDRLGYTRLSAPIAGVITAVSANPGQV 210

Query: 185 VTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLRELEPQAD 244
           V AGQ VV LA    ++AV ++   L          TV+   +P I T   +R++ P AD
Sbjct: 211 VNAGQEVVRLATFAGRDAVFNVSERLIASGLNDPLVTVSLLSNPAIKTQGHVRDVSPLAD 270

Query: 245 ATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWVIDTQN 304
           A TRT R R++L   P    LG  +   ++        LP SAL  + G+  V+V+D Q 
Sbjct: 271 AQTRTWRVRISLVEPPPEMVLGATVQGEVTLPGGNVINLPASALTRQGGRPAVFVVDPQT 330

Query: 305 KTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDE 352
           +T+  + + L   +   +V++ G+  G++V TAGV+ L+ G+KVT  E
Sbjct: 331 QTLRLQPITLRHYSDSQMVVADGLAAGDKVATAGVSKLRAGEKVTLAE 378