Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  187 bits (474), Expect = 5e-52
 Identities = 123/355 (34%), Positives = 180/355 (50%), Gaps = 4/355 (1%)

Query: 1   MKRLLLM--LSAAVLLVGCTSEEE-APEVIRPVLSVKVEPQVQSQLGRFAGSIQARFEST 57
           MK +L+   L     L  C+SEE  A + +R V  V  E +   +     G ++AR ++ 
Sbjct: 1   MKTILIAAALGGIFALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVITGEVRARVQTD 60

Query: 58  LGFRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADAR 117
           L FRVSG+I  R +DVGA+VK G  LA +DP +Q+  +  A  +L   +AQ   AQ    
Sbjct: 61  LSFRVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTFD 120

Query: 118 RQQQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAW 177
           RQQ L+   V +++ +D AQ  L TT  A+  A++ +  ARD L Y+ LRAD   VITA 
Sbjct: 121 RQQNLFKTQVTSRSAVDKAQETLLTTQGAVRSAQAQLDTARDALSYTELRADADGVITAR 180

Query: 178 QAEAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLR 237
             E GQ   A Q V TLA    ++AV D+   L  +        V+   DP     A +R
Sbjct: 181 NVEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPVR 240

Query: 238 ELEPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQV 297
           E+ P  D    T R ++ L +      LG  +S           ELP SA+  +DG   V
Sbjct: 241 EISPTIDPDNGTIRVKVGL-NGDMTMPLGAPVSGHFRFRQIDAIELPWSAMASQDGAPAV 299

Query: 298 WVIDTQNKTVATRDVALIDRTADSIVLSAGVQPGERVVTAGVNSLKPGQKVTFDE 352
           W++D ++  VA R V + D      V++ G+ PG+ VVT G   L+ G+KV +++
Sbjct: 300 WLVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKVAYEK 354