Pairwise Alignments

Query, 355 a.a., Efflux membrane fusion protein, RND family from Pseudomonas putida KT2440

Subject, 361 a.a., efflux protein from Agrobacterium fabrum C58

 Score =  263 bits (672), Expect = 5e-75
 Identities = 142/358 (39%), Positives = 224/358 (62%), Gaps = 4/358 (1%)

Query: 1   MKRLLLMLSAAVLLVGCTSEEEAP-EVIRPVLSVKVEPQVQSQLGRFAGSIQARFESTLG 59
           + R L +L  A+ L  C  ++EA  E  RPVLSV VE ++   L R  G++++R ++ LG
Sbjct: 4   INRSLFLLIPAIALSSCQEKQEAAAEAPRPVLSVVVEEKLADAL-RLTGTVESRIKTDLG 62

Query: 60  FRVSGRIARRWLDVGAQVKPGDTLATLDPTDQQNQLRAAEGDLAKVQAQWINAQADARRQ 119
           FRV GRI  R +DV   VK GD +A++DP   +  +++A+ DL+  +AQ  NA    +RQ
Sbjct: 63  FRVLGRIIARNVDVADLVKKGDVVASIDPLALELSVKSAQSDLSNAEAQLANAVTTEQRQ 122

Query: 120 QQLYDRGVGAQAQLDIAQTNLKTTSAALEQARSAVSQARDQLDYSTLRADHAAVITAWQA 179
           + L +   G +A L+ A+  ++T +AA+ +AR+ + +A +QL Y+ LRA+   V+TA   
Sbjct: 123 RVLAEARSGTEAALEEAEQAMRTANAAVAKARANLDKAEEQLGYAQLRAEFDGVVTATSG 182

Query: 180 EAGQTVTAGQAVVTLARPDVKEAVIDLPIGLAEQLSKGLTFTVASQLDPTINTTASLREL 239
           E GQ V+AGQ VVT+ARP+V++ V+D+P   A++L  G TF +A QLDP I+ T  +RE+
Sbjct: 183 EIGQVVSAGQTVVTIARPEVRDVVVDVPQFAAQRLEIGSTFEIALQLDPKIHMTGVVREI 242

Query: 240 EPQADATTRTRRARLTLASTPAAFHLGTAISVTLSSEVSPRSELPLSALLERDGKTQVWV 299
            P+A+  TRTRR +++L   P AF LG+ ++    +   P+  LP SALL+ D    VW+
Sbjct: 243 APEAETATRTRRTKISLQDAPQAFRLGSVVTALALAASEPQITLPASALLKTDSGWGVWI 302

Query: 300 IDTQNKTVATRDVALIDRTAD--SIVLSAGVQPGERVVTAGVNSLKPGQKVTFDEDAQ 355
           ++    TV  R V +    A+  S+ ++ G++PGERV +AGV+ LK GQ +  D++ +
Sbjct: 303 VNADTATVTYRPVTIDGEPAEGGSVRITGGIKPGERVASAGVHKLKDGQAIRIDQEVR 360