Pairwise Alignments

Query, 1017 a.a., RND efflux transporter from Pseudomonas putida KT2440

Subject, 1040 a.a., AcrB/AcrD/AcrF family protein from Ralstonia solanacearum UW163

 Score =  735 bits (1897), Expect = 0.0
 Identities = 402/1027 (39%), Positives = 610/1027 (59%), Gaps = 13/1027 (1%)

Query: 2    KGSFNLSDWALKHQSFVWYLMFVSLLMGIFSYFNLGREEDPSFTIKTMVIQTRWPGATQD 61
            +G FNLS  A++ ++   +L+ +  L G+ S+F LGR EDP+FT+K M I T WPGAT  
Sbjct: 3    QGRFNLSALAVRERAVTLFLICLISLAGLISFFKLGRAEDPAFTVKVMTIITAWPGATAQ 62

Query: 62   ETLYQVTDRIEKKLEELDSLDYTKSYTRPGESTVYVYLRDTTKAKDIPDIWYQVRKKIQD 121
            E   QV ++IEK+++EL   D T++YTRPG +   + L D+T   ++ + +YQ RKK+ D
Sbjct: 63   EMQDQVAEKIEKRMQELRWYDRTETYTRPGLAFTTLSLLDSTPPSEVQEEFYQARKKVSD 122

Query: 122  IRGEFPAGIQGPGFNDEFGDVFGSIYAFTADGLTLRQLRDYVEQARAEVRDVPNIGKIEL 181
                 P G+ GP  NDE+ DV  +++A  A G   R L    E  R  +  VP + K+ +
Sbjct: 123  EVANLPPGVIGPMVNDEYADVTFALFALKAQGEPQRVLVRDAETLRQRLLHVPGVKKVNI 182

Query: 182  VGTQDEVLYLNFSTRKLAALGIDQRQVMQALQAQNAVTPAGMIEAGPERISVRTSGQFAS 241
            +G Q E +Y+ FS  +LA LG+  ++V  AL +QNA+T AG +E    ++ +R  G F  
Sbjct: 183  IGEQSERIYVEFSHDRLATLGVSPQEVFAALNSQNALTAAGSVETKGPQVFIRLDGAFDE 242

Query: 242  EKDLQTVNLRINDRFFRLADIADIERGYVDPPSPMFRYNGQTAIGLAIGMKAGGNIQVFG 301
             + ++   +       +L+DIA ++RGY DP + M R  GQ A+ L I M+ G N    G
Sbjct: 243  LQKIRDTPVVSQGHTLKLSDIATVKRGYEDPATFMVRNGGQPALLLGIVMREGWNGLDLG 302

Query: 302  AALKKRMDQVVQDLPVGVGVHTVSDQAVVVKQAVGGFTSALFEAVVIVLAVSFVSLGVRA 361
             AL K +  V  D+P+G+ +  V+DQAV +  AV  F    F A+++V+ VSFVS+G RA
Sbjct: 303  KALDKEVSAVNADMPLGMSLTKVTDQAVNISAAVDEFMLKFFAALLVVMLVSFVSMGWRA 362

Query: 362  GLVVACSIPLVLAMVFVFMEYSGITMQRISLGALIIALGLLVDDAMITVEVMVTRLEMGE 421
            GLVVA ++PL LA+VFV M  +G    RI+LG+LI+ALGLLVDDA+I +E+MV ++E G 
Sbjct: 363  GLVVAAAVPLTLAVVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGY 422

Query: 422  SKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALIVSWVVA 481
            S+  A+ +A++ TA PML+GTLVT  GF+P G   S+AGEYT  +F ++ +ALI SWV+A
Sbjct: 423  SRVAASAYAWSHTAAPMLSGTLVTAVGFMPNGFARSTAGEYTSNMFWIVGIALIASWVIA 482

Query: 482  VFFAPVLGVHILKGDKL--KAHEA--EPGRVGRAFEGGLLWCMRNRWLTIIGTVVLFALA 537
            V F P LGV +L   K     H+A  +  R  R F   L   +  +WL     V LF LA
Sbjct: 483  VVFTPYLGVKMLPDFKKVEGGHDAIYDTPRYNR-FRALLGRVIARKWLIASSVVGLFVLA 541

Query: 538  IFCMRFVQNQFFPSSDRPEILVDLNLPQNASIEETRKVVDRFEARIKDDPDLVHWSTYIG 597
            I  M  V+ QFFP SDRPE+LV++ +P   SI +T     + EA + +  +    + Y+G
Sbjct: 542  ILGMAVVKKQFFPISDRPEVLVEVQMPYGTSINQTSAATAKLEAWLTNQKEAGIVTAYVG 601

Query: 598  QGAIRFYLPLDQQLQNPYYAQLVIVSKGFEERQAMMDRLQKILHEEFV-GVGTNVQSLEM 656
            QGA RFYL +  +L +P +A++VI +   EER A+  RL++ + +         V  L  
Sbjct: 602  QGAPRFYLAMGPELPDPSFAKIVIRTDSQEERDALKQRLRQAIADGLAPEARVRVTQLVF 661

Query: 657  GPPVGRPIQYRVSGADIDQVRKHAIELATLLDQNEHIGEMIYDWNEPGKVLRVEIAQDKA 716
            GP    P+ YRV+G D + +R+ A ++  ++D +  +  +  DW      L   + QD+ 
Sbjct: 662  GPYSPFPVAYRVTGPDAETLRRIAADVRQVMDASPMMRTVNTDWGMRVPTLHFTLQQDRL 721

Query: 717  RQLGLSSEDVANVMNSIVSGVQITQVNDNIYLVDVVARAEDSERGSPDTLQNLQILTPNG 776
            + +GL+S  VA  +  +++G+ +T V ++I  V V AR+    R  P  + +  +   NG
Sbjct: 722  QAVGLTSSAVAQQLQFLLNGIPVTAVREDIRTVQVTARSAGDIRLDPARIGDFTLAGTNG 781

Query: 777  TSIPLLSFATVRYELEQPLVWRRDRKPTITIKASVNGEIQPTDLVAQLKPKIDEFASKLP 836
              IPL     +   +E+P++ RRDR PTIT++  +   +QP D+   +  ++     KLP
Sbjct: 782  QRIPLSQVGKIDVRMEEPIIRRRDRMPTITVRGDIADGLQPPDVSTAISKQLQPIIDKLP 841

Query: 837  VGFEVATGGTVEESAKAQGPIRKVIPLMLFLMATFLMIQLHSVQKLFLVVSVAPLGLIGV 896
             G+ +   G++EES KA   +  + P+ML +    L+ Q+ S+  + +V   +PLGLIGV
Sbjct: 842  SGYRIEQAGSIEESGKATKAMLPLFPIMLAVTLLILIFQVRSIAAMVMVFLTSPLGLIGV 901

Query: 897  VLALVPTGTPMGFVAILGILALAGIIIRNSVILVTQIDEFEAQGLSPWDAVVEATNHRRR 956
            V  L+  G P G  A++G++AL+GI++RN++IL+ QI   + +GL P+ AVVEAT  R R
Sbjct: 902  VPTLILFGQPFGINALVGLIALSGILMRNTLILIGQIQHNKDEGLDPFRAVVEATVQRAR 961

Query: 957  PILLTAAAASLGMIPIAREVFWGPMAYAMIGGIIVATLLTLLFLPALYVAWYKIR----- 1011
            P++LTA AA L  IP+   VFWG +AY +IGG    T+LTL+FLPA+Y  W++IR     
Sbjct: 962  PVILTALAAILAFIPLTHSVFWGALAYTLIGGTFAGTILTLVFLPAMYSIWFRIRPGNAV 1021

Query: 1012 --EPQKH 1016
              +P +H
Sbjct: 1022 DPQPDRH 1028