Pairwise Alignments

Query, 276 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 367 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  246 bits (627), Expect = 7e-70
 Identities = 134/262 (51%), Positives = 171/262 (65%), Gaps = 1/262 (0%)

Query: 11  LLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQI 70
           LLT P       SIRA A VF DP+SQ L + ++++AP    VLI GETGTGKEL+AR I
Sbjct: 3   LLTLPPSPALATSIRATAQVFEDPKSQALLDHIQQVAPSEASVLIIGETGTGKELVARHI 62

Query: 71  HRTSDRGGL-FVSVNCAAISPTYADAELFGYSAGSHGGTASSRAGWFGSASGGTLYLDEI 129
           H  S R    FV+VNC A S +  +AELFG+  G+  G  S++AGWF  A GGTL+LDEI
Sbjct: 63  HNLSARRNRPFVAVNCGAFSESLVEAELFGHEKGAFTGALSAKAGWFEEADGGTLFLDEI 122

Query: 130 ADLPLAIQGKLLAALENREVTRVGAQQPQPVDVRLVAATSIDLARVVRAGRFNERLYQYL 189
            DLP+AIQ KLL  L+ REV R+G+++  P+DVR++AAT++ L + + AG F E LY  L
Sbjct: 123 GDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVLAATNVQLEKAINAGHFREDLYYRL 182

Query: 190 REGALELPPLRERPGDILPLAEYFAGIYSVRLQRPVPLVSEAAQRVLEGHFWPGNTRELE 249
              +LEL PLR+RPGDILPL  +F   YS RL      +S  A+  L+ + WPGN RELE
Sbjct: 183 DVVSLELSPLRDRPGDILPLTRHFIEAYSQRLGYGPITISREAEHKLKSYSWPGNIRELE 242

Query: 250 NVIHFALLVNDGEEILPEDLDL 271
           NVIH  LL+     I  +DL L
Sbjct: 243 NVIHHTLLICRDGVIERDDLRL 264