Pairwise Alignments

Query, 276 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  198 bits (503), Expect = 2e-55
 Identities = 112/243 (46%), Positives = 151/243 (62%), Gaps = 1/243 (0%)

Query: 30  VFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQIHRTSDRGGL-FVSVNCAAI 88
           V  +P S+QL E   R+A     VLI GE+GTGKE+LAR IH+ S R    FV++NCAAI
Sbjct: 129 VACEPASRQLLELAARVARSDSTVLISGESGTGKEVLARYIHQQSPRAAQPFVAINCAAI 188

Query: 89  SPTYADAELFGYSAGSHGGTASSRAGWFGSASGGTLYLDEIADLPLAIQGKLLAALENRE 148
                +A LFG+  G+  G  +++AG F  A GGTL LDEI+++P+A+Q KLL  L+ RE
Sbjct: 189 PDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLDEISEMPMALQAKLLRVLQERE 248

Query: 149 VTRVGAQQPQPVDVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDILP 208
           V RVG ++P  +D+R++A T+ DLA  V AGRF E LY  L    L   PLRERPGDIL 
Sbjct: 249 VERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYYRLSVFPLAWRPLRERPGDILQ 308

Query: 209 LAEYFAGIYSVRLQRPVPLVSEAAQRVLEGHFWPGNTRELENVIHFALLVNDGEEILPED 268
           LAE     +  +++     +S AA+  L+ + WPGN REL+N +  AL++  G  I   D
Sbjct: 309 LAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRELDNALQRALILQQGGVIEAAD 368

Query: 269 LDL 271
             L
Sbjct: 369 FCL 371