Pairwise Alignments

Query, 276 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 367 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  243 bits (619), Expect = 6e-69
 Identities = 135/262 (51%), Positives = 169/262 (64%), Gaps = 1/262 (0%)

Query: 11  LLTFPELDKSPLSIRAKALVFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQI 70
           LLT P       SIRA A VF D RSQ L   L+++AP    VLI GETGTGKEL+AR I
Sbjct: 3   LLTLPPSPSLATSIRATAQVFEDARSQALLAHLQQVAPSEASVLIIGETGTGKELVARHI 62

Query: 71  HRTSDR-GGLFVSVNCAAISPTYADAELFGYSAGSHGGTASSRAGWFGSASGGTLYLDEI 129
           H  S R  G FV+VNC A S +  +AELFG+  G+  G  +++AGWF   +GGTL+LDEI
Sbjct: 63  HNLSGRRNGPFVAVNCGAFSESLVEAELFGHEKGAFTGALAAKAGWFEEGNGGTLFLDEI 122

Query: 130 ADLPLAIQGKLLAALENREVTRVGAQQPQPVDVRLVAATSIDLARVVRAGRFNERLYQYL 189
            DLP+AIQ KLL  L+ REV R+G+++  P+DVR+VAAT++ L + + AG F E LY  L
Sbjct: 123 GDLPMAIQVKLLRVLQEREVVRLGSRKSIPIDVRVVAATNVQLDKAIAAGNFREDLYYRL 182

Query: 190 REGALELPPLRERPGDILPLAEYFAGIYSVRLQRPVPLVSEAAQRVLEGHFWPGNTRELE 249
              +L+L PLRERPGDILPL  +F   Y  RL      +S  A+R L  + WPGN RELE
Sbjct: 183 NVVSLQLYPLRERPGDILPLTRHFIKTYCNRLGYGEVRLSPEAERKLVSYDWPGNIRELE 242

Query: 250 NVIHFALLVNDGEEILPEDLDL 271
           NVIH  LLV     +  +DL L
Sbjct: 243 NVIHHTLLVCRNGLVQDDDLRL 264