Pairwise Alignments

Query, 276 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

Subject, 457 a.a., sigma-54-dependent Fis family transcriptional regulator from Magnetospirillum magneticum AMB-1

 Score =  194 bits (493), Expect = 3e-54
 Identities = 112/255 (43%), Positives = 151/255 (59%), Gaps = 9/255 (3%)

Query: 29  LVFIDPRSQQLREDLERLAPQPLPVLIRGETGTGKELLARQIHRTSDRGGL-FVSVNCAA 87
           ++F DPR  Q  +  E++A     ++I GE+GTGKEL+AR IH  S R    FV+VNCAA
Sbjct: 119 IIFKDPRMGQTLKLAEQVANSDASIMITGESGTGKELIARFIHNKSKRSDKRFVAVNCAA 178

Query: 88  ISPTYADAELFGYSAGSHGGTASSRAGWFGSASGGTLYLDEIADLPLAIQGKLLAALENR 147
           I     ++ELFG+  G+  G  + R G F  A GGTL LDEI+++ + +Q KLL A++ +
Sbjct: 179 IPENLLESELFGHEKGAFTGAVARRIGKFEEAQGGTLLLDEISEMDVRLQSKLLRAIQEK 238

Query: 148 EVTRVGAQQPQPVDVRLVAATSIDLARVVRAGRFNERLYQYLREGALELPPLRERPGDIL 207
           E+ RVG  QP  VDVR++A ++  +   VR G F E LY  L    L LP LRERP DI 
Sbjct: 239 EIDRVGGNQPVKVDVRILATSNRTMEDEVRKGTFREDLYYRLNVVTLALPALRERPLDIA 298

Query: 208 PLAEYFAGIYSVRLQRPVPLVSEAAQRVLEGHFWPGNTRELENVIHFALLVNDGEEILPE 267
            LAE+F   Y+     P   +S  A+++L  H W GN RELEN +H A+L+  G EI PE
Sbjct: 299 VLAEHFVKRYTEANGLPTRQLSAEARQLLSRHHWRGNVRELENTMHRAVLLASGAEIGPE 358

Query: 268 DLDL--------PDP 274
            + L        PDP
Sbjct: 359 AMILSGNPVGTNPDP 373