Pairwise Alignments

Query, 260 a.a., conserved membrane protein of unknown function from Pseudomonas putida KT2440

Subject, 261 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 70.5 bits (171), Expect = 3e-17
 Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 39/269 (14%)

Query: 6   YLLLGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDASVLTHLAVGTSLATIVFTSINA 65
           +++ G   G + G+ GVGGG ++ P+L++      F  +  T  AVGT L     T    
Sbjct: 8   FVIAGLIVGFIVGMTGVGGGSLMTPILLW------FGINPAT--AVGTDLLYAAITKSGG 59

Query: 66  VREHHRKRAVQWPIFIWMTIG------ILLGAGVGAKTASLIQGPLLQKIIGVFALVIAA 119
           V  H + + + W I  W+T+G      + L       T   +   ++++ +GV  L+ A 
Sbjct: 60  VLVHSKNKNIDWAITGWLTLGSVPAVLLTLWFLASLHTDPSVMNAVIKQALGVVLLLTAL 119

Query: 120 QMALD------LKPKASRGVPGKPGLIGA-----GGVIGWASAIFGIGGGSL--TVPFLT 166
            +          +  A       P  + A     G V+G   A+  IG G+L     F+ 
Sbjct: 120 AILFKKSLLAFAQRHAGDSYHMSPRNLNALTVVTGAVLGTMVALTSIGAGALGTVALFIL 179

Query: 167 WRSLPMQQAVATSSACGLPIAVASALSFMLLGWHEEHLPPHSLGYVYLPALVGIAVTSMF 226
           +  L  ++ V T  A  +P+ + + L    +G  + HL    LG++ + +L GI V    
Sbjct: 180 YPFLATRRLVGTEIAHAVPLTLVAGLGHASMGNMDWHL----LGFLLMGSLPGIYV---- 231

Query: 227 FARFGARLAHKLSPRLLKRLFAALLFCVG 255
               G+ +  KL   +L+   A +L  +G
Sbjct: 232 ----GSHMTGKLPDGVLRPCLAVMLMAIG 256



 Score = 37.0 bits (84), Expect = 4e-07
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 135 GKPGLIGAGGVIGWASAIFGIGGGSLTVPFLTWRSLPMQQAVATSSACGLPIAVASALSF 194
           G  G + AG ++G+   + G+GGGSL  P L W  +    AV T     L  A  +    
Sbjct: 4   GNFGFVIAGLIVGFIVGMTGVGGGSLMTPILLWFGINPATAVGTD----LLYAAITKSGG 59

Query: 195 MLLGWHEEHLPPHSLGYVYLPALVGIAVTSMFFA 228
           +L+    +++     G++ L ++  + +T  F A
Sbjct: 60  VLVHSKNKNIDWAITGWLTLGSVPAVLLTLWFLA 93



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 5   LYLLLGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDASVLTHLAVGTSLATIVFTSIN 64
           L ++ GA  G +  L  +G G +    L   F L  F A   T   VGT +A  V  ++ 
Sbjct: 149 LTVVTGAVLGTMVALTSIGAGALGTVAL---FILYPFLA---TRRLVGTEIAHAVPLTLV 202

Query: 65  AVREHHRKRAVQWPIFIWMTIGILLGAGVGAKTASLIQGPLLQKIIGVFALVIAAQMA 122
           A   H     + W +  ++ +G L G  VG+     +   +L+  + V  + I  ++A
Sbjct: 203 AGLGHASMGNMDWHLLGFLLMGSLPGIYVGSHMTGKLPDGVLRPCLAVMLMAIGYKLA 260