Pairwise Alignments

Query, 574 a.a., ABC transporter, permease protein from Pseudomonas putida KT2440

Subject, 291 a.a., Spermidine/putrescine transport system permease protein PotB from Xanthobacter sp. DMC5

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 68/281 (24%), Positives = 120/281 (42%), Gaps = 26/281 (9%)

Query: 25  RLFVVGGKSLLLILLV----LAVLMPLLAIFWRGF-----SGEAGQGGGLLAARELFTSA 75
           RL  +G  S LL+ +     +  L P++ +    F     SG  G G  L       T +
Sbjct: 13  RLGPLGTASALLLPIAVVNAIGFLWPVVNLLKMSFREAQASGALGAGYNLDTWTNALTDS 72

Query: 76  SFHWLLGNSLSVAFTVAAIVVPLAYLFAFALQRTLIPAKGLWRGISLLPLLAPSMLPAIA 135
               L+ NS+ V+  +  + +  +Y  A  L R+     G WR + ++ ++AP +  A+ 
Sbjct: 73  FTLELITNSVGVSLLITVLTLIASYPIALYLHRST----GTWRTMLMVLVVAPLLTSAVV 128

Query: 136 LVY----LFGNQGLLRGLLSDN--------IYGFWGIVLGEAIYTFPHALMILLSALSLA 183
             Y    +  ++GL+   L           ++   G+V+G      P+ ++ LLS     
Sbjct: 129 RTYGWIAILSDRGLVANALMALGMAEPPRLMFNLTGVVIGLTEILMPYMILALLSGFGRL 188

Query: 184 DARLFDAASSMGAGSWRAFTSITWPASRQAVFAAFCLVFTLTITDFGVPVVVGGD-YQVL 242
           D RL +AA ++GA   + F  +  P +   +     L F L I+ F  P ++GG    +L
Sbjct: 189 DPRLEEAALTLGASPLKTFWRVVLPLTAPGMALGGLLCFVLAISSFVTPKLLGGGRVFLL 248

Query: 243 ALEAYKAVVGQQQFGRGALIGMVLLLPALFSFTVDAWLRRR 283
           A E Y   +    +   A + M++L+    S  + A   RR
Sbjct: 249 ATEIYDQAIVTLNWPLAAALSMIVLVVFGISLALYARALRR 289



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 64/278 (23%), Positives = 111/278 (39%), Gaps = 52/278 (18%)

Query: 317 ALLVVIGMAVYSSLVTFWPYN--LSLSLRHYMFEDTAGGGWL------AYRNSVTMAIGT 368
           A  +++ +AV +++   WP    L +S R        G G+       A  +S T+ + T
Sbjct: 20  ASALLLPIAVVNAIGFLWPVVNLLKMSFREAQASGALGAGYNLDTWTNALTDSFTLELIT 79

Query: 369 ALIGSIVIFT----------GAYLMEKTQGQRLLNHALRLLSFIPMAVPGLVLGLGYVFF 418
             +G  ++ T            YL   T   R +   L +L   P+    +V   G++  
Sbjct: 80  NSVGVSLLITVLTLIASYPIALYLHRSTGTWRTM---LMVLVVAPLLTSAVVRTYGWIAI 136

Query: 419 FNLNG------------NPLHVLYGGMGLLVVCT--IAHYLTTAQMTATTALRQLDGEFE 464
            +  G             P  +++   G+++  T  +  Y+  A ++      +LD   E
Sbjct: 137 LSDRGLVANALMALGMAEPPRLMFNLTGVVIGLTEILMPYMILALLSG---FGRLDPRLE 193

Query: 465 AAALSLKAPLYKHFLRVTVPICLP--ALLDIIRYL-----FVSAMTTVSAAIFLYSPDTL 517
            AAL+L A   K F RV +P+  P  AL  ++ ++     FV+        +FL + +  
Sbjct: 194 EAALTLGASPLKTFWRVVLPLTAPGMALGGLLCFVLAISSFVTPKLLGGGRVFLLATEIY 253

Query: 518 LAAIAVLNMDDAGNVGGAAAMSTLILLTSAGASLLLAA 555
             AI  LN          AA  ++I+L   G SL L A
Sbjct: 254 DQAIVTLNWP-------LAAALSMIVLVVFGISLALYA 284