Pairwise Alignments

Query, 341 a.a., ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 348 a.a., putative protein from Xanthobacter sp. DMC5

 Score = 87.4 bits (215), Expect = 5e-22
 Identities = 92/358 (25%), Positives = 164/358 (45%), Gaps = 49/358 (13%)

Query: 2   HKHLALAVAVSAVFSLQASAADTQLTV--YTALEAEQL-KTYKQAFEKANPDIEIKWVR- 57
           HK   L +  + + +  A AA+T LTV  Y+ L  E+  K   + F KA+PDI++ +   
Sbjct: 5   HKFGTLCLLAAGLMAGPA-AAETNLTVMAYSGLFQERYTKAVLEPFMKAHPDIKVTFFPL 63

Query: 58  DSTGIITAKLLAEKERPQADAVWGLAASSLAILDQNGMLEAYAPKDLGKISGNYRDAANP 117
            S+  +   L A+K  PQAD V    + S A  D+ G+       ++  +   Y +A  P
Sbjct: 64  PSSAAMLGNLRAQKAAPQADVVIMDVSVSKAGTDE-GLFTKIDETNIPNVKDLYPNARIP 122

Query: 118 P-AWVGMDVWAATICFNTIEAEKQGLSKPVSWQDLTKPEYKGKIVMP------------- 163
             A VG+      + +N  + ++     P SW ++ K  YKGK+V+P             
Sbjct: 123 SVAGVGVTFDNLVLLYNAEQVKEA----PKSWMEMAKAPYKGKVVIPGVPDIQGLGLVLI 178

Query: 164 -NPASSGTGFLDVSAWLQTFGEPQGWAYMDALHQNIGQYVHSGSKPCKLAA--AGEFPIG 220
            N A+ GT +L            +G A +  +  N+  +     KP   A    G+  +G
Sbjct: 179 LNKANGGTDYLA--------SVDKGLAAVAEIAPNVQTWE---PKPEVYAPIITGQAALG 227

Query: 221 ISFEYPA-VQLKRQGAPLDIVLPKEGLGWEIEATAVIKGSPKADVAKRLADFSASPAAME 279
           + +   A V  ++ G  +   +P+EG  ++I    ++ G+P A+ AK   +++ SP A +
Sbjct: 228 VGYNARAQVNSEQSGGKIKATIPQEGTIFQINTINLVAGAPAAEAAKTFVNYALSPEAQK 287

Query: 280 LYKENFAVLAAPGIAKPQTELPADYEQRLIKN-------DFVWASKNRDQILAEWRKR 330
            + E   +  AP  +K +    A  ++  +KN       D++  ++ RD+I  +WR+R
Sbjct: 288 SFTE--TMFYAPTNSKAEI-TGAALDRTAVKNLDKVMAVDWIALAQVRDKIAEQWRRR 342