Pairwise Alignments

Query, 341 a.a., ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 343 a.a., Spermidine/putrescine-binding periplasmic protein from Xanthobacter sp. DMC5

 Score = 69.7 bits (169), Expect = 1e-16
 Identities = 90/343 (26%), Positives = 146/343 (42%), Gaps = 28/343 (8%)

Query: 3   KHLALAVAVSAVFSLQASAADTQLTVYT------ALEAEQLKTYKQAFEKANPDIEIKWV 56
           K +AL +A++A  +  ASAA+ +L V T       L AE + +    F K +  +E++++
Sbjct: 4   KIVALGLALAAFVAGPASAAE-KLVVSTWGGSFRDLIAEAIAS---KFTK-DTGVEVEYI 58

Query: 57  RDSTGIITAKLLAEKERPQADAVWGLAASSLAILDQNGMLEAYAPKDLGKISGNYRDAAN 116
              T     K    K  P++D  +  A       + + + E      +   S     A  
Sbjct: 59  TGGTIDRLNKAKLAKGSPESDITFTTAHVGWLYANDD-LFETLDLSKMPNASKLVPQAKV 117

Query: 117 PPAWVGMDVWAATICFNTIEAEKQGLSKPVSWQDLTKPEYKGKIVMPNPASSGTGFLDVS 176
            P  +G   +  TI +      K       SW DL  PE KG +  P+   S    + VS
Sbjct: 118 SPYHIGAWAYVYTIGYRPDLTPKN--INFSSWADLWNPELKGMLAAPDFDPSH--IIAVS 173

Query: 177 AWLQTFGEPQGWAYMD----ALHQNIGQYVHSGSKPCKLAAAGEFPIGISFEYPAVQLKR 232
           A L   G P  W   +    AL  N   +  + +   +L A GE P+ I     A  +  
Sbjct: 174 ALLAG-GSPADWQKGEQKLLALKPNFKAFYTNDANSQQLIATGETPVQIMLSMNAYYMIA 232

Query: 233 QGAPLDIVLPKEGLGWEIEATAVIKGSPKADVAKRLADFSASPAAM----ELYKENFAVL 288
           QG P+ +V+PKEG    I+  A++KGS   ++A++  + +  P       EL K +  VL
Sbjct: 233 QGVPIKLVIPKEGGVLGIDTMAIMKGSKNRELAEKFINTALDPEVQGKIAELKKGSPTVL 292

Query: 289 AAPGIAKPQTELPADY--EQRLIKNDFVWASKNRDQILAEWRK 329
            A  ++    +LP  +   ++  K   +   K R +  AEWRK
Sbjct: 293 GAK-VSAETAKLPGVFTTAEQWDKETIIIDHKLRAEKTAEWRK 334