Pairwise Alignments

Query, 341 a.a., ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 368 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 23/239 (9%)

Query: 43  AFEKANPDIEIKWVRDSTG----IITAKLLAEKERPQADAVWGLAASSLAILDQNGMLEA 98
           AF+   P+I +  +    G    +   K   + + PQA  V  +  +    +   G+L+ 
Sbjct: 59  AFKAKYPEITVNELNPDAGSADEVEAVKANKDNKGPQAPDVVDVGLAFGPQMKAEGLLQP 118

Query: 99  YAPKDLGKISGNYRDAANPPAWVGMDVWAATICFNTIEAEKQGLSKPVSWQDLTKPEYKG 158
           Y      +I  N +DA     W G D +     F   +  K   + P  W DL KPEY G
Sbjct: 119 YKVSTWAEIPDNVKDADG--YWYG-DYYGVMSMFVNKDLVK---NVPKDWADLLKPEYSG 172

Query: 159 KIVMP-NPASSGTGFLDV-SAWLQTFGE------PQGWAYMDALHQNIGQYVHSGSKPCK 210
           ++ +  +P +S    L V +A L T  +        G  Y   L++  G ++    K   
Sbjct: 173 QVALAGDPRASNQAILGVLAAGLSTGAKSGKEAGEAGLKYFADLNK-AGNFLPVIGKAGT 231

Query: 211 LAAAGEFPIGISFEYPAVQLKR---QGAPLDIVLPKEGLGWEIEATAVIKGSPKADVAK 266
           L A G  PI ++++Y A+  K+      P ++V+P++G+   +    +   +P  + AK
Sbjct: 232 L-AQGATPIIVAWDYNALSWKKTLNDNPPTEVVVPEKGVLAGVYVQGISAYAPHPNAAK 289