Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 116 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

 Score =  131 bits (330), Expect = 6e-36
 Identities = 64/100 (64%), Positives = 80/100 (80%), Gaps = 2/100 (2%)

Query: 12  VPGA--NLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSY 69
           VP A  +L+AY+  V+ IP+LTVE E+ L  R   E+D++AAR+++ +HLRFVVH+AR Y
Sbjct: 17  VPSALGSLDAYIGAVHQIPVLTVEDEQALARRFRDEEDLDAARELIHSHLRFVVHVARGY 76

Query: 70  AGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHW 109
            GYGL   DLIQEGN+GLMKAVKRF+PE GVRLVSFAVHW
Sbjct: 77  NGYGLQIGDLIQEGNIGLMKAVKRFDPEQGVRLVSFAVHW 116