Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 313 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

 Score =  271 bits (692), Expect = 2e-77
 Identities = 148/289 (51%), Positives = 189/289 (65%), Gaps = 19/289 (6%)

Query: 13  PGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGY 72
           P  NL+AY+   N +P+LT+E+E+    +L  + D+E+A  +V++HLR VV I+R Y GY
Sbjct: 23  PLGNLDAYISAANRLPMLTLEEEQGFARKLRDQNDLESAGALVLSHLRLVVSISRQYLGY 82

Query: 73  GLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKA 132
           GL   DLIQEGNVGLMKAVKRF+P+ GVRLVS+A+HWIKAEIHE+IL+NWR+VKVATTKA
Sbjct: 83  GLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYILKNWRMVKVATTKA 142

Query: 133 QRKLFFNLRSQKK-------------RLAWLNNDEVHRVAESLGVEPREVREMESRLSGQ 179
           QRKLFFNLRS K+                 L+ DEV ++A  L V+P EV EME+RLSG 
Sbjct: 143 QRKLFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQMATRLNVKPEEVLEMETRLSGG 202

Query: 180 DMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRD 239
           D+  DP    D + AF  P  YL D   +P   LE       S+  +  AL+ LD+RSR 
Sbjct: 203 DVMLDPGPSDDGEEAF-GPIAYLADATQEPTALLESQQRDRLSSDGIATALEALDDRSRR 261

Query: 240 ILYQRWL-----AEEKATLHELADKYSVSAERIRQLEKNAMNKVKALIA 283
           I+ +RWL          TLH+LA  Y VSAERIRQ+E  AM K+K  +A
Sbjct: 262 IVEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVAAMKKMKKALA 310