Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 304 a.a., RNA polymerase sigma factor RpoH from Sphingobium sp. HT1-2

 Score =  192 bits (487), Expect = 1e-53
 Identities = 116/278 (41%), Positives = 163/278 (58%), Gaps = 13/278 (4%)

Query: 10  ALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSY 69
           AL   A+L  Y+  +   PLLT EQE  L +R    QD EAA Q+V +HLR V  IA  Y
Sbjct: 12  ALGGEASLNRYLSEIRKFPLLTPEQEYMLAKRYEEHQDPEAAAQLVTSHLRLVAKIAMGY 71

Query: 70  AGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVAT 129
            GYGL  ++LI EGN+GLM+ VK+F  E G RL ++A+ WI+A I EFILR+W +VK+ T
Sbjct: 72  RGYGLPVSELISEGNIGLMQGVKKFEAERGFRLATYAMWWIRASIQEFILRSWSLVKMGT 131

Query: 130 TKAQRKLFFNLRSQKKRL-----AWLNNDEVHRVAESLGVEPREVREMESRLS-GQDMAF 183
           T +Q+KLFFNLR  K  +       L  ++V ++A  LGV   +V  M  R++ G D + 
Sbjct: 132 TASQKKLFFNLRRMKNNIEAFEDGDLRPEDVTKIATDLGVSEDDVVSMNRRMAMGGDTSL 191

Query: 184 DPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSN--LHEALQGLDERSRDIL 241
           +     D D  +Q    +L+D   DP      A+  + +  +  L EA+  L++R + IL
Sbjct: 192 NVPMREDGDGQWQD---WLQD--TDPLQDERVAEEQERTQRHEMLVEAMTDLNDREKHIL 246

Query: 242 YQRWLAEEKATLHELADKYSVSAERIRQLEKNAMNKVK 279
            +R LAEE  TL EL+  Y VS ER+RQ+E  A  K++
Sbjct: 247 AERRLAEEPKTLEELSQVYGVSRERVRQIEVRAFEKLQ 284