Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 335 a.a., RNA polymerase, sigma S (sigma 38) factor from Pseudomonas putida KT2440

 Score =  106 bits (265), Expect = 6e-28
 Identities = 71/271 (26%), Positives = 143/271 (52%), Gaps = 18/271 (6%)

Query: 18  EAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGLAQA 77
           + Y++ +   PLL+ E+E     RL  + D    ++M+ ++LR VV IAR Y   GL+  
Sbjct: 65  QLYLNEIGFSPLLSPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLL 123

Query: 78  DLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLF 137
           DLI+EGN+GL++AV++F+PE G R  ++A  WI+  I   I+   R +++      ++L 
Sbjct: 124 DLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVKELN 182

Query: 138 FNLRSQKKRLAWLNN----DEVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEADDDS 193
             LR+ ++    L++    +E+  + E    E + +  +  R+S  D++  P    D D 
Sbjct: 183 VYLRAARELTQKLDHEPSPEEIATLLEKPVAEVKRMLGLNERVSSVDVSLGP----DSDK 238

Query: 194 AFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRW--LAEEKA 251
                    +D   DP   L+D    D+ + ++ + L  L ++ R+++ +R+     E +
Sbjct: 239 TLLDT--LTDDRPTDPCELLQD----DDLSQSIDQWLGELTDKQREVVVRRFGLRGHESS 292

Query: 252 TLHELADKYSVSAERIRQLEKNAMNKVKALI 282
           TL ++  +  ++ ER+RQ++   + +++ ++
Sbjct: 293 TLEDVGLEIGLTRERVRQIQVEGLKRLREIL 323