Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score =  101 bits (252), Expect = 4e-26
 Identities = 73/255 (28%), Positives = 128/255 (50%), Gaps = 13/255 (5%)

Query: 30  LTVEQERDLGERLYYEQDV--EAARQMVMAHLRFVVHIARSYAGYGLAQADLIQEGNVGL 87
           LT+EQ +D+  R+   +     A ++MV A+LR V+ IA+ Y   GL   DLIQEGN+GL
Sbjct: 351 LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGL 410

Query: 88  MKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSQKKRL 147
           MKAV +F    G +  ++A  WI+  I   I    R +++     +     N  S++   
Sbjct: 411 MKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQ 470

Query: 148 AWLNNDEVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEADDDSAFQSPAHYLEDHRY 207
                     +AE + +   ++R++  +++ + ++ +     D+DS       +L D   
Sbjct: 471 EMGREPTPEELAERMLMPEDKIRKV-LKIAKEPISMETPIGDDEDS-------HLGDFIE 522

Query: 208 DPAVQLE-DADWSDNSTSNLHEALQGLDERSRDILYQRWLAEEKA--TLHELADKYSVSA 264
           D  ++L  D+  S++  S  H+ L GL  R   +L  R+  +     TL E+  ++ V+ 
Sbjct: 523 DTTLELPLDSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 582

Query: 265 ERIRQLEKNAMNKVK 279
           ERIRQ+E  A+ K++
Sbjct: 583 ERIRQIEAKALRKLR 597