Pairwise Alignments

Query, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

Subject, 296 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  194 bits (494), Expect = 1e-54
 Identities = 107/275 (38%), Positives = 159/275 (57%), Gaps = 8/275 (2%)

Query: 15  ANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVVHIARSYAGYGL 74
           +NL  Y+  +   P+L  +QE  L +     +D  AA Q+V +HLR V  IA  Y GYGL
Sbjct: 14  SNLSRYLQEIRKFPMLEPQQEYMLAKSWQQHEDSGAAHQLVTSHLRLVAKIAMGYRGYGL 73

Query: 75  AQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQR 134
             ++LI EGNVG+M+AVKRF+P+ G RL ++A+ WI+A I E+IL +W +VK+ TT AQ+
Sbjct: 74  PLSELISEGNVGMMQAVKRFDPDRGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQK 133

Query: 135 KLFFNLRSQKKRL-----AWLNNDEVHRVAESLGVEPREVREMESRLSGQDMAFDPAAEA 189
           KLFFNLR  K ++       L+ ++VH +A  L V  ++V  M  RL+  D + +    A
Sbjct: 134 KLFFNLRRLKGQMQAIEEGDLSPEQVHAIATKLDVPEQDVVNMNRRLASPDHSLNAPLRA 193

Query: 190 DDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSRDILYQRWLAEE 249
           + +  +Q    +L D      + L D +        L  A+  L++R RDIL +R L E 
Sbjct: 194 ESEGEWQD---FLVDETASQEITLADREELGKRRKLLANAMTALNDRERDILTERRLREA 250

Query: 250 KATLHELADKYSVSAERIRQLEKNAMNKVKALIAA 284
             TL +L+ KY +S ER+RQ+E  A  K++  I A
Sbjct: 251 PTTLEDLSQKYGISRERVRQIEVRAFEKLQKAIKA 285