Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

 Score =  128 bits (321), Expect = 7e-34
 Identities = 106/372 (28%), Positives = 163/372 (43%), Gaps = 46/372 (12%)

Query: 82  GNVLLV----APAAEFAAQ-SADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGL 136
           GN+ +V    A A   AA   A    +Q   A  QP      P+    A    Q+ L+G 
Sbjct: 296 GNIYVVYLKNADAVRLAATLRAAMAANQQTSASGQPGAAGSSPVPQQSAPQAMQVNLSGG 355

Query: 137 EGDGIPPAS--------------LSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVA 182
           +  G   AS              +  D  TN+L++  P  +  +MR ++ +LD    QV 
Sbjct: 356 QNGGSAAASAPLNNANQPSTGGQIQADPTTNSLIITAPEPQYRQMRAVIDKLDGRRAQVM 415

Query: 183 IEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVD---LGLERA------------- 226
           IEA IVE +     + GV+W   L    +            L L +A             
Sbjct: 416 IEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATKNVAGITPSP 475

Query: 227 GSSIGL-GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPY---QE 282
           G ++G+ G + G  +L    +     G+  ++S P ++T D E A+I+ G  VP+   Q 
Sbjct: 476 GLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQY 535

Query: 283 TSQSGA------TSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALN-NVPPI 335
            S SG+      T+V  ++  L+L V P I  +  V MT+       D   A + N P  
Sbjct: 536 ASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDQNTAKDPNGPTT 595

Query: 336 RKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELL 395
            K  + + V V DG  +++GG+ S    N V+KVP  GD+P +G LF+ +     KS L+
Sbjct: 596 NKRSIESSVLVEDGGLVMLGGLLSDDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLM 655

Query: 396 VFLTPRIMSDQA 407
           +FL P +M D A
Sbjct: 656 MFLRPAVMRDGA 667



 Score = 51.6 bits (122), Expect = 8e-11
 Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 11  SATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTL----RLQDVPWDQA 66
           S  P +GEP++LNF + ++ AV + +A   G ++V    V+G++ L     +Q       
Sbjct: 35  SDAPRRGEPITLNFANADIEAVARTMAVVTGRDVVVDPRVKGTMNLVTDRAIQPAAAFNQ 94

Query: 67  LDLVLRSKGLSRRQEGNVLLVAPAAEFAAQSA--DARVSQALDAHLQPLRRELLPIHHAK 124
               LR +G +  +   +  V P A+   QS+  +  +     +    +  ++  +++  
Sbjct: 95  FASALRLQGFAVVEADGLYKVVPEADAKLQSSAVNTSIGAVSSSGSNQIVTQIFRLNYES 154

Query: 125 AADLAQLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVP 177
              L  +L   +     P  +++V+   N+LV+   AD +  + +++A LDVP
Sbjct: 155 PNSLLPVLRPLIP----PNNTINVNPGNNSLVITDYADNMRRLARIIASLDVP 203