Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 517 a.a., Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly from Sphingobium sp. HT1-2

 Score = 89.0 bits (219), Expect = 3e-22
 Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 245 LSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQ-ETSQSGATSVSFREASLSLEVT 303
           L   E SG    ++QP +     ETA  L G E PY      S   S+ F++  + L  T
Sbjct: 274 LDLAESSGLATTLAQPNLTALSGETASFLAGGEYPYTVNNGPSSGNSIQFKQYGVQLAFT 333

Query: 304 PQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQN 363
           P +  D ++ + VR T    D+ +  + VP ++       V +  G+  +I G+ +    
Sbjct: 334 PTVLADGRISLRVRPTVSSLDF-SVSSTVPALKSRTAETTVELGSGQGFMIAGLLNNETG 392

Query: 364 NVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 403
           N V+KVP  G++P +G LF+  + Q  ++EL++ +TP ++
Sbjct: 393 NTVNKVPGLGNIPVLGSLFKSRSFQRNETELVIVVTPYLV 432