Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 418 a.a., DNA uptake porin HofQ from Erwinia tracheiphila SCR3

 Score =  238 bits (608), Expect = 2e-67
 Identities = 144/412 (34%), Positives = 231/412 (56%), Gaps = 9/412 (2%)

Query: 1   MATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQD 60
           +  LL +P+   +P      SL F D  +  VLQ LADY  +NLV +  V+GS+++RL +
Sbjct: 10  LTLLLPLPVLCNSP---AGFSLAFDDAPLSQVLQALADYQQLNLVVASGVEGSLSIRLHN 66

Query: 61  VPWDQALDLVLRSKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPI 120
           VPW QALDLV +   LS  ++ N++LV P +    +     + Q  +   QPL   +L +
Sbjct: 67  VPWVQALDLVAQMGKLSIERQDNIMLVRPESWQQEKVHQETLRQKREEDSQPLHTLMLTL 126

Query: 121 HHAKAADLAQLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQ 180
           H+A   ++   L A  E    P  S++VD RTN+L++   A  L E R+ V  LD P++Q
Sbjct: 127 HYADVENVNASLKAEREKLMTPRGSITVDSRTNSLLLRDTAVALEETRRWVTALDQPLQQ 186

Query: 181 VAIEARIVEANVDYEKSLGVRWGGPLYGEKLRP--GKELFVDLGLERAGSSIGLGLLRGD 238
           + + + IV    D  + LGV W      +  R     +L V+L       + GL + R D
Sbjct: 187 IELTSHIVTVTEDSLRELGVNWAMSADEQVNRALRASQLQVNLAAGSPALTTGLSVARLD 246

Query: 239 -VLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS-GATSVSFREA 296
             LL+LELSA+E+    EII+ P++ T+ ++TA I +GTE+PY+ +S S G+TSV F+EA
Sbjct: 247 GRLLNLELSALEQENKLEIIASPRLFTSHQQTASIKQGTEIPYEVSSGSNGSTSVEFKEA 306

Query: 297 SLSLEVTPQITPDNKVIMTVRVTKDEPDYV--NALNNVPPIRKNEVNAKVRVADGETIVI 354
            L +EV P I P+ ++++ + ++++ P     +       I K E+  +V V DG+T+ +
Sbjct: 307 VLGMEVIPVIQPNGRIMLKIHISQNLPGSTLRSGTGEYIAIDKQEIQTQVTVKDGQTLAL 366

Query: 355 GGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSDQ 406
           GG++        + VP  G+LP +G LFR      K+ EL++F+TPR++ D+
Sbjct: 367 GGIFQQQNARGKNNVPLLGNLPVIGALFRHSKTAHKRRELVIFITPRLIGDE 418