Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 434 a.a., DNA uptake porin HofQ from Dickeya dianthicola ME23

 Score =  242 bits (617), Expect = 2e-68
 Identities = 153/413 (37%), Positives = 236/413 (57%), Gaps = 15/413 (3%)

Query: 1   MATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQD 60
           M  L S  LA A    GEP+SL F DV V+ VLQ LAD+  +NLV +  V G+V+L LQ 
Sbjct: 18  MMVLFSGMLAEARG--GEPVSLAFDDVPVQRVLQALADHQQLNLVVAPGVTGNVSLNLQQ 75

Query: 61  VPWDQALDLVLRSKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPI 120
           VPW QALD++LR   L+  ++G+V++V P A    +        A      PL+   + +
Sbjct: 76  VPWQQALDIILRMGQLTIERQGSVMMVYPDAYMKDRQRQQEELAAKQRQQLPLQNLSVTL 135

Query: 121 HHAKAADLAQLLLAGLEGDGIPPASLSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQ 180
            +A+AAD+   L +          S++VD+RTNTL+V      L ++R  + +LD P+ Q
Sbjct: 136 QYAEAADVVTSLQSQRGTLLTERGSVTVDKRTNTLLVRDVVAALEQIRPWIGELDKPLAQ 195

Query: 181 VAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKEL-----FVDLGLERAGSSIGLGLL 235
           V + A IV  + ++ K+LGV WG    G+    G+ L      V L +E    + G  L 
Sbjct: 196 VQLAAHIVTISSEHLKALGVNWG---LGDAATTGQALQMNNFSVSLPVESPAINAGFHLA 252

Query: 236 R-GDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETS-QSGATSVSF 293
           +    LLDLEL A+E+    EII+ P++ TA ++TA I +GTE+PYQ +S  SG+TS+ F
Sbjct: 253 KLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEF 312

Query: 294 REASLSLEVTPQITPDNKVIMTVRVTKDEPDYV---NALNNVPPIRKNEVNAKVRVADGE 350
           +EA L +EVTP+I    ++ +++ ++++ P         + +  I K E+  +V V DGE
Sbjct: 313 KEAVLGMEVTPRILHGGQITLSLLISQNMPGRAIKQGEGSEILAIDKQEIQTQVTVQDGE 372

Query: 351 TIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIM 403
           TIV+GG++   +N    +VP  G LP +G+ FR D  Q  + EL++F+TP ++
Sbjct: 373 TIVLGGIFQQQKNQGERQVPGLGALPGIGQWFRSDNQQHTRRELVIFITPTLI 425