Pairwise Alignments

Query, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

Subject, 714 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  108 bits (271), Expect = 4e-28
 Identities = 78/289 (26%), Positives = 126/289 (43%), Gaps = 39/289 (13%)

Query: 150 ERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGE 209
           ++TN+L++  P D + ++ Q++ QLD+   QV +EA I E       +LG++W       
Sbjct: 371 DQTNSLIITAPPDIMRDLEQVINQLDIRRPQVLVEAIIAEIQDADGLNLGIQWANK---- 426

Query: 210 KLRPGKELFVDLGLERAGSSIGLGLLRGDVLL-----------------------DLELS 246
             R G   F + G+  + + IG    R D  L                        + L+
Sbjct: 427 --RAGMTQFTNTGIPISTAVIGTDQFRSDGTLTTAYASALGSFNGITAGFYRGNWSMLLT 484

Query: 247 AMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATS-------VSFREASLS 299
           A+ +    ++++ P +VT D   A    G EVP    SQ+   S       V  +   + 
Sbjct: 485 ALSRDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQTTVGSGNNIFNTVERKTVGIK 544

Query: 300 LEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVP---PIRKNEVNAKVRVADGETIVIGG 356
           L V PQI   + V++ +          N+  N           VN  V V +GET+V+GG
Sbjct: 545 LRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGATFNTRTVNNAVMVTNGETVVVGG 604

Query: 357 VYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRIMSD 405
           +   +     DKVP  GD+P++G LFR  +    K  L++FL P I+ D
Sbjct: 605 LLDKTTIESNDKVPLLGDIPWLGSLFRSKSQSVNKRNLMLFLRPTIIRD 653



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)

Query: 118 LPIHHAKAADLAQL---LLAGLEGDGIPPASLS---VDERTNTLVVHLPADRLAEMRQLV 171
           +P+ +A A D+A+L   L    E + +P   L+    DERTN++VV    +      +++
Sbjct: 197 VPLTYASAEDVAKLVNDLNKTDEKNALPSTMLANVVADERTNSVVVSGEENGRQRAIEMI 256

Query: 172 AQLD 175
            QLD
Sbjct: 257 RQLD 260