Pairwise Alignments

Query, 266 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  104 bits (260), Expect = 2e-27
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 36  LRVGMDPTYMPFQMTNKRGEIIGFEVDILKAMAKSMGVKFEAVSTAYDGIIPALLTDKFD 95
           LRV  D T+ P +   + G+  GF+V++++A+ K++G K E +   + G++P L++ +FD
Sbjct: 31  LRVATDATFPPMEFV-ENGKRTGFDVELVEAIGKTLGRKIEWIDIDFKGLVPGLISKRFD 89

Query: 96  MIGSGMTLTQERNLRLNFSEPFIVVGQTLLIRKELAGEIKSYKDLNNEKYRLTSKLGTTG 155
           M  SG+ +T ER   ++F+ P+   G  +++ K+    IK+  D+N +K  ++ ++GT  
Sbjct: 90  MAVSGIYITDERKKVVDFTVPYYAGGLVVMV-KDGNTAIKTPADINGKK--VSVQVGTKS 146

Query: 156 EMVSKKLISKAKYHGYDNEQEAVMDVVNGKADAFVYDAPYNVVAVDKAGAGKLLFLDEPF 215
              +K+   + +    +  QE    V  G+ADA V   P     V   G  K+  L E  
Sbjct: 147 VSYTKEKFPQVQLMEVEKNQEMFNLVDIGRADAAVTGKPAAYQYVRTRGGLKV--LPEQI 204

Query: 216 TYEPLAFGLKKGDYDSINFINNFLHQIKHDGTYDRIHDKWF 256
           T E     ++K   +    +N  + ++K DGTYD+I  KWF
Sbjct: 205 TTEEYGMAIRKDTPELTKAVNGAIEKLKADGTYDQIVKKWF 245