Pairwise Alignments

Query, 235 a.a., Ribosomal RNA small subunit methyltransferase E from Pseudomonas putida KT2440

Subject, 248 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Sphingobium sp. HT1-2

 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 56/188 (29%), Positives = 77/188 (40%), Gaps = 32/188 (17%)

Query: 56  LEKHEAELEVAFDQQPPAKLPLTLVLAVPRPK-MLRRLFQTVATLGVPRL--ILLNSYKV 112
           + K +  LE     +PP  +P   +   P  K  +  + +    LGV RL  +L     V
Sbjct: 66  IRKRDLVLECVAQTKPPEVVPDFWLCCAPIKKGRIDLIAEKACELGVARLQPVLTRRAVV 125

Query: 113 EKSFWQTPFLQPDTIRENLILGLEQARDTVLPE----VIIEKRFKPFVEDRLPTIAAGTL 168
           +K       L  D +  +L+   EQ   T LPE    V ++   K +  +R    A  T 
Sbjct: 126 DK-------LNLDRLHAHLVEAAEQCGRTALPELTEMVKLDALLKGWSAERHLFFADETG 178

Query: 169 G------LVGHPGPYPACPRAVEQAVTLAIGPEGGWIPYEVDLL-GKAGLAPVQLGDRIL 221
           G      L  HPGP               +GPEGG+ P E + +    G  PV LG RIL
Sbjct: 179 GASLDETLRAHPGP-----------AAFLVGPEGGFDPAEREAIRATPGAVPVSLGPRIL 227

Query: 222 RVETAVTA 229
           R ETA  A
Sbjct: 228 RAETAAIA 235